AMCG00000040


Basic Information

Item Value
gene id AMCG00000040
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 501495 ~ 569704 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000040
atgtatccaaagGAGGTCTTGTGCACTTTCCAGGACTGTCCTGAAGGCTCCAGGGATTTCCGAGAGGAGCAGTGTTCCCAGTTCGATGGCATCGACTTCCAGGGCAAACGATACAAGTGGCTTCCCTATTATGGAGCTGACAACAAATGCGAGCTGAACTGCATTCCCAAAGGGGAGAACTTCTACTACCGCCACCGCCAGGCAGTGGTGGACGGGACGCCCTGTCACCCGGGCAGAAAGGATGTCTGTGTGGAGGGGGTCTGCAAGCCAGTGGGTTGTGACAACATGCTAGAGTCACCTCAGAAGGAGGACCCCTGTCTGGTGTGTGGGGGGAATGGACAGAGCTGCTACCTGGTCAGAAAGACCTTCAGTGTGCTTAATCTCCCTAAAGGTCAGCACATCGACCTCCCCTCAGCGACTATGCCACTACCCATCACAGTATCCCTGCAAGTCCCTGCCATTAAGAACGTACGTGGGGAGTACTACCTGAATGGACACTGGGCCATCGACTACATCCGAACATCTCACATTGCcagcactgtactgcactatgaGCGTGGAGCTGAGGGAGACGTGGCCCCAGAGACCATCAGAGGCAGGGGCCCCACCACAGAACCTCTAGTCATAGAGCTCATCAGTCAGGAGCAGAACCAGGGGGTGGATTACGAGTACTATCTACCTTCCCGCAGCCTGAATGAGGGCTATTTCTGGAGCTATGGGTCCTGGTCTGAATGCAGCAAGGAATGTGGCGCAGGTGTCCAGAGACGCAGTGTGTCCTGCTTGACCCATGACGGCTCCAGCTCCCATGTGGTGGAGGAAGCCCAGTGTGCTTCCTTTTCTGCCCGCCCCCACTCAGAGCAAGCCTGCAACCTGCGCCAGTGTGCCTCCTGGAGCTACAGTACCTGGACACAGTGCTCTGTCAGCTGTGGAGAGGGCCAGCAGACACGCTCAGTGGTTTGCCTGGGGGCCTCTGGTGCACGGCTCCAGGACTTTTCCTGCAGCTCTCTCCCTAAAGAAGCTACTGTGCAACGCTGCAAGGAAAGAAGCTGCCCCCAGCTGATCAGCTGGCACATTGGGGACTGGGGCTTGTGTTCAAAGAGCTGTAAGTCAGGCCTGCGGGAGCGCCAGGTGATCTGCTCCGACCCAGACCACAACTTCTACAACGCAGAGTTTTGTGATTCCACCACCAAGCCCCCCACCACGGAGTACTGCAACACACAGGACTGCTCCCGCCCTCAGTgggTGCCCAGCATGCCCGACCCTCAAGATTACGATAACACACATCTTGGCATCCTGGTACCATACATCTCTGAAGAGCCCTCGACAGATGGCTCCAGGACAAACGATGGGGGCACCATCAACCTGTACAACCAATGGGAGTCACAGCCCCAGAGGTGCACGCAGTCCCAGTATGGGTGCTGTTCTGATGGATGGACCCCTGCCAGTGGACCCCAAGGCTCGGGCTGCCCTGGCAACAGCTGTACCCAAACCAGGTTCGGCTGCTGTCCTGACGGGGTGAGGGATGCCCTGGATCGCTTCAGGGCTGGCTGCCAGTACACTCACACTCCTACAGAGTCCTACTCCTCCACCACCAGGAGGGAGCCCAGTGACTCTTGCCGCTCCACCACCTATGGGTGCTGCTATGACCGGATTACTCCTGCAGCCGGGTCCAGTGGGGAGGGCTGCCATAGTCGGCCAAATCATTCTCTTACCCAAGCCTGTACGCTGCCCAATGCTAATGGTCCCTGCTCTGACTGGACAGCCCGCTGGTACTACGATGACTCCTCAGGGGGCTGTGGCCGCTTCTGGTATGGGGGCTGCCATGGCAACCGCAACAACTTTGCCACGGAAGAGGAATGCAGACAAGAGTGCCTGGAGTTGGCCAGCCACCGCTGGTTGCTGTACGGGCCACGCCTCTTTCCTGGCATAAGCCCCGTGGCTGGGCAGGGCACAGTGGGATTGCCGGAGAAGGATGAGTCATTGGGAGAGGGCCAGCTACAAGGCCCTGCCCCGCGGGGTGATCAATACAGAGTGGCCCTCACGGATGGCAGTGCTAGCTCAGGCCGCTCTATTTCTTTGAGAAAGGTGTTTACAGTGTATCAAGGCTCTGACCGCTTGCTCACCGTGGACAAGAACATGGGCACCTCCACAGCCAACAATGAACAGAGCAGGCAGACCTTCCACAGAGGCCCAGTGGCCAGCCCTCTGGATAGGGGGCTCACAGATAGGCAGGTGAGGGCGCAGACCAGGGCAGAGCTTGTGAAGGGGCAGCACCGGGAGATACATGGCACCTCCATTCACTATGGCAGCCTTCCTGCCTCACAGGAGAGGGGCTCCAGATGGATCCCACAGGATCAAGGGCGATCCAATAGTCATATGGCCTCGAGCCACACTGCTCCAGCCAGACTGCCTGCTGATGTGGGAATCCTGGCTTCCAGATCAAAGGACCCCAGGCAGCAAGGTACCTCCTCTGAATCAGAGAAGACTGTGGGAAAGGACGGGATGTCTATTGAGAAGGGTGATGGTGCCTCTCACCGTGCACAAGCAGCTTTCCAGTCTGCGGTAGGATTAGTGGATAGCAGCCAGACCCAGACCCAGAGgTTGAGCATTGACAAGTCAGGCCCCTCATCAGTGGAAGGCCGACCGGGTCAGACAGTCAGGCTGCCCTGCAGGGTCACTCCCTCTGACTCGGTCACTGTAGAGTGGAGGCGAGACGGCCGCCCCCTTAGCTCCTCTAAGCACCGCCAGCAGGCTGATGGCACTTTGCTGGTCGGCCCTCTGGAGTCTGAGGATGCCGGCTGGTTATTGTGTGTCGCCTccaatgacagagagagagaccaccGCTACATCTACCTCTCAGTGTCACAAGATGCCCGCTCAGCTTCCCAAAACCCCTCAGTGCGGCAGGCCAGTGGCTCAGAGTCAGTACCTCCTGCTCAACTCCCCTCCTCAACAGGAGCACAGCCCCCTCGCCCGGGCTCACACAGGCTGAGCATTGACAAGTCAGGACCCTCGTCAGTGGAAGGCCGGCCAGGTCAGACAGTCCGGCTGCCCTGCAGGGTCACCTCCTCTGCATTGGTCACTGTGGAATGGAGGCGAGATGGCCGGCCCCTAACCTCCCCCAGGAACGGTGTACCTGTGCGGCCTGACGGGCGTCACGTCCTGGTATCGGTAGATGGCAGCCTAATCCTCAACAATGTGCAGCCGGCTGACGAGGGAGCATACACCTGCAACGCCTACACTGGCACCTACTCTGTCAGCGCCACTGCTGAGGTCAAGGTCAACAAAAGCACTGAGCAAGCACTGCCTTCCAGCTCTAACACAGCAGAGTGCACCGACCAGCCAGAGCTAGCCAACTGTGACCTGATCGTGTATGCCAAGCTGTGCTCCAGCGAGTATTACTCCAACTTCTGCTGTGCCAGCTGCTCCCGACACAGCCAGCCAGCCGGCAGTCGCACTGAGCAGGGCTAG

Function

GO: NA

KEGG:

id description
K23624 PAPLN; papilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000040 True 3471 mRNA 0.59 21 501495 569704

Neighbor

gene id symbol gene type direction distance location
AMCG00000039 NA coding upstream 72669 428554 ~ 428826 (+)
AMCG00000038 LOC102299462,LOC102207316,LOC108269999,LOC100697238 coding upstream 82590 392178 ~ 418905 (+)
AMCG00000034 NA coding upstream 165078 317564 ~ 336417 (+)
AMCG00000035 NA coding upstream 185015 256457 ~ 316480 (+)
AMCG00000028 NA coding upstream 345688 146945 ~ 155807 (+)
AMCG00000041 NA coding downstream 160198 729902 ~ 743938 (+)
AMCG00000044 NA coding downstream 174639 744343 ~ 787026 (+)
AMCG00000047 NA coding downstream 217380 787084 ~ 787849 (+)
AMCG00000048 NA coding downstream 246237 815941 ~ 816517 (+)
AMCG00000051 NA coding downstream 316696 886400 ~ 886792 (+)
G147314 NA non-coding upstream 16034 482114 ~ 485461 (+)
G147313 NA non-coding upstream 27988 470695 ~ 473507 (+)
G147292 NA non-coding upstream 114542 386290 ~ 386953 (+)
G147288 NA non-coding upstream 144507 356772 ~ 356988 (+)
G147286 NA non-coding upstream 161981 337466 ~ 339514 (+)
G147380 NA non-coding downstream 258751 828455 ~ 1174302 (+)
G147393 NA non-coding downstream 335266 904970 ~ 1069770 (+)
G147405 NA non-coding downstream 371154 940858 ~ 941911 (+)
G147466 NA non-coding downstream 619104 1188808 ~ 1189042 (+)
G147551 NA non-coding downstream 919876 1489580 ~ 1492313 (+)
G147311 NA other upstream 2984 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 247054 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 397133 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 463720 28694 ~ 37775 (+)
G147416 NA other downstream 493381 1063085 ~ 1116950 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 1466319 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 1834026 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 3121068 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 3151281 3720985 ~ 3724316 (+)

Expression


Co-expression Network