AMCG00000042


Basic Information

Item Value
gene id AMCG00000042
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 703657 ~ 709451 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000042
aaaacctATGAGACATCCCTTGGTCTGTAGGTTTTGTAAGAAATCACAGGCCACCCTTTCAGTACACCTCAGACGAGTGTGTATGAAGAGAAGCACTCCTGACGAGGTAACAGCTGAGGTGGAGGCGGCCAAGGAATCAATGCTGAAGTTCATGTGGGAAGCCAGAGTGATGGACTTCAATATTTGGAGAGTGTTGATCGACGACGAAAGTGTTTTGgcaaaggtaaaaaaatatatgctcAGCAAAGGATTCATATTCGTCAATGACGCTGCTAATAATCCACAGCCCACTACATTGTCTGTGCGCTCCTCCATAGAGGATGATGTGGAGGAATCAGCTGAGACGCAGGATACCCTTCATGATGCGAGGGAGCATTACAACTGGGAGAACAAGATTCGGAAGAAGATGCAGCAAGCAGGGCTCTACAGGAAATTCAGCTTGGATCACACAATGCTGTCTGGCTTCATGAAGTACCTGAGGGACGACCTAAAGATTCCAAATTTCAAACAGGAGgtAGAGAATGTCTCTCGTTTCCTCTACTTCGTGGATCCGACAGGTCCTAGCCTCAGATTTGTTACTGACATTGAGAAAACCAGGTCCTACTACAAACACCTTGCTGATGTTGGTGGACTTAGCAAGCAGACTGTCATCAATTACATGAAGAATGTAAGGAGGTTCATGCACTACATTATCGTGTACACAAACCTGCAATTTGATGACAAAGACAAACACGATAACTGCAAGAACTACAGAGATTTCCTTACAGATCTGCAGAAGGCATATAATAAACAGGTATCAAAGGAAATCACTGGAAAAAGGTACATGCAGTTGAACACCACAATGCAGTCACCAAAGGATTGCCTCCTCATTCTTCGAGCAGCAAAAAAGGACTTCCATGCAGTGATTGGCAAACTACTGAGTGGCGAAGTAGACATCACTGCAAATGAAAAACGTACTGTTCTGTATTACTTGGAGGCGATCGTCATGATCAAGCACCTGCAACGGGCTGGAGTGGTGAAGAACATGACTGTCAGTGAGTGGATCAACAGGACAGAATCCAGCATCGACATGGGATCGGAGAGGAAGAGATTTGTTATTGTGGGGGTTAAGGAGCACAAAACTGGATCACAGCAAGTGGCCACCTTTGCACTCAATGAAGAGGAAGAACTGTTAGCAAGGAGGGTCTTCGAGACTGCAACAAAAATTGGATTCAGCGATGGGGAGAAATCAATCGTTGCTGACTACCTGGCCCACACCACAGCCACAGCAGAGAACCACTACAGAATGATTCGACCGGAGACCGTAGCCACCGCAAGTTGTCTTCTTTCAGGACTTGTCTCGAACTCAGATTCAGACTCATCACCACTGGCAGCAACTCCAACACAACAGAGACCAGTTGCAGCAGCCTACACATTCCCAAGAATGGATGAGGACCAGGTTTATGCTCAACTTATCTTGAACTATCCCGTCACCATTGACGCCACAGCCCCCAAAGGAAAAGGAAGGAAGTCACTGACGGGCATGTATGACACAGTCTGCTATGACAGGTGGAGATCACAGCAGCAAGCCCTACGGGTTACCCATATTCTGTCACATTTTGCCAGACGTCAGCCGACTCTACACCATGTGGAGAAGTGGATTAAGAGACAAAGGTGGGACACCAACATCCCAAAGGCAGACAAAGTCTTCTCCATGTGGACACTGCAGAAGACCACAAAGGACACCTTTGGACGGCATATCAATCATTCAAGAGTAAATAGCAACTTGCAGCCTCACACATTCCAGTTGGAAATATCAGGGGACTTGACTGATGTGATTATCTTCATAGCAAAACATGAAATTCACATAAACACTGAACTTCTGTTTGACTATGGAGTCGAGAAAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000042 True 1888 mRNA 0.46 9 703657 709451

Neighbor

gene id symbol gene type direction distance location
AMCG00000043 NA coding downstream 110044 573375 ~ 593613 (-)
AMCG00000036 NA coding downstream 338989 343411 ~ 364668 (-)
AMCG00000033 NA coding downstream 446687 255301 ~ 256970 (-)
AMCG00000045 NA coding upstream 130326 839777 ~ 840646 (-)
AMCG00000046 NA coding upstream 131255 840706 ~ 859715 (-)
AMCG00000065 LOC106591853 coding upstream 594488 1303939 ~ 1342353 (-)
AMCG00000062 NA coding upstream 683358 1392809 ~ 1441915 (-)
AMCG00000058 churc1 coding upstream 775069 1484520 ~ 1488089 (-)
G147358 NA non-coding downstream 23474 660358 ~ 680183 (-)
G147305 NA non-coding downstream 271350 428423 ~ 432307 (-)
G147248 NA non-coding downstream 478324 195473 ~ 225333 (-)
G147201 NA non-coding downstream 683267 19601 ~ 20390 (-)
G147368 NA non-coding upstream 30155 739606 ~ 740609 (-)
G147420 NA non-coding upstream 93360 802811 ~ 887879 (-)
G147419 NA non-coding upstream 462865 1172316 ~ 1174302 (-)
G147467 NA non-coding upstream 479348 1188799 ~ 1189043 (-)
G147588 NA non-coding upstream 903882 1613333 ~ 1619067 (-)
G147324 NA other downstream 218074 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 311175 387118 ~ 392482 (-)
AMCG00000050 NA other upstream 180661 890112 ~ 940835 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other upstream 2842708 3552159 ~ 3558901 (-)
AMCG00000161 NA other upstream 4362016 5071467 ~ 5077246 (-)
G148395 NA other upstream 4629358 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 5294735 6004186 ~ 6012637 (-)

Expression


Co-expression Network