AMCG00000044


Basic Information

Item Value
gene id AMCG00000044
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 744343 ~ 787026 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000044
ATGGAGACTGCTCATCATGCAAAGAGCAGGGAGATGCAGTACCCTCCCAAGGCCAGCAATGCGAAGACCAGGAAAGAGCACAGACTGGAGGTAATGAAGAGCAACCCTGAGTGTCTGTACACAGACTTTGCTGGGGCAGGAGACAAGAGGATGAACACCCAGGCCTGGCACACTGCTGTGTGCCGGACATACAGCAACATTAAGAAAAGGGGAATCAGCTACGGCAGGCAGGTTCTCATTGGGGAGGACTCGGAACCGAACGGCACAGTGCTCAATCGGgcatatgatgatgatgaggaggaggtggtggtggtggtggtcgTCATTGTCAAGGTGCGGCTTCGTAACATGATCCGAGTGCTGGTTTCGGAGAAGGAGGATTTTCATCGCAAGGTGGACCTGCGTTTCGTTGTGAAGGATGTTCTTGGAGGGGACTTTCCGTCTCGCGGGATTTTTGATGTTACTTTGTCCTCTGAAGCTCTTTGTCTCCGGTTGTATGAGACCTACCAGGCGCAGCAGGACCATCCATCCCTGGCAGAACCGGTTGCTGTGGCTCCATCCTCCCCTTCCTCGGTGATCCCTCCGCTGTCCTATGCCCGGGTTGTGGAGTCTGGGTCTGCTGTGATGTCTGAGGATTCGGAGGGCGGAATGGAGCTGGAGGCCTTGCTTGGTTCTTCTACTGAGATGTGTTTGGCGGCTGACTCGGATGGTGTGGGGGAAGAGGTGGAGAGCCTTTCTCCTTCCTGGGCAGAGCAGATGGAGTCAGTGGAGGAGGCTGCGGCTGTGTTGGAGGCCTCTTCTACTGAGGAATTTTCTTGGCAGCAGACTGGCAAGTCTCGTCATAGGGCACAGCGGCAGGTGCCTGAAGAGACTGCTCCTCTTCCGAAGTGGAAGGGTCTTGTCATTCATAACCGTTTTGAACCATTGAGGCAGGAGCAAGGGGAGATGGTGGTGGAAGAGATGCCTGAGCAGCCTGTCTCCCAATATTCTTCTGTTGGGGACGGGGACGCTGCtacttcctctccctccctcccatttCTAAGTAACTCGGCCGTCACCGGCCTGATGACTGCTATTTGCATGGTTGCCTCAGTACTGTTTTGTAGGTCCCAGAGGTACCACGAGCGGTCCAGGCTGCAATTTTGGCAGCGTCAGCTGGATGACTTGCATGGCCAACTGAATGTTGGTTTAGCGGTGTACTGGGCAGAATTTTTGTTTATTAAGGCAAAGAACCGTGACGTGGATGCCGCTGAAGGAGAGGACAGGCTGCTCCCCACCGGTGGCCAGAGCCCCGGTGGATTGTGGCTGGCTTCAATCCCGCGCCCCACCTACGCTGCTGCTATAGTGGCGGACCGTGAGTGGCGGGTGGATGGTAAGGAGACGGAGCAGGGGCTGCAATTGCGGCCCATCGAGGAGGTGGTTCAGGAGGTGCAGCAGGTGGTGAGGGCTGTTGAACAGCAGTTGGATGGTGGTCAGCGGAGTGTGGCAGAAACGGGGCAGGAGGAGGTGTCATCCTCCGCCAGTGGTGCGGTGATGGAGGGGGAGGACATGGACGTGGCCTCAGTGGATGAGGGGGGCATTGGGGATTGGGAGTCTGTTACTCGTGCTCATGGTGGGAGGGAGAAGGTGAGGAAGGAGAGGGCGGTAGGGAAGGtgtcctctgcctcctcctcagTTTTCCTGTTGGACAAAGAGCTTCCCGTCTTCAACAAATATGCTGTATTGGAGTGCAAAGGGGAGTTGGGGACAGGGTCTGCTTCGCCTTCTTTGGTGCCGGACACTGGGACTGCTTCTTTGGCCCTGGAGGTTGTGGGGGGTCCGGGTTCATGTGGAGGGGGTGCTGCCGAGACCTTACTGGCTGACTTTGAGAACTCTGTAGACTCTGGAACGATGGATACTTTTGCCTGGAATGACACAGAACTAAGGGATCGGgcatatgatgatgatgatgaggaggaggaggaggaagaggatgtggtggtggtggtggtcaTTGTCAAGCAAATAAGCTTGCTAAGGTACCCAGCAGCAGTAGCCCTGCCGGTGGCACCCTTTCCTGGGGTGCCACCTCCTGGCCTGTGCTGCTGGCGTTCTGGGGGGAGCCCATTGCTGACCAAGGAGAAGGCAATGATGACGGACAACTCAACAAGTCCGACCCATAGGAAAGGGATTTTTGATGTGACATTGACCTCTGAGGTTCTTTGCCTTCGTCTCTATGAGAAGTACAAGTCCCATACTGGGGATCCTGTTTTTGCCGGGTTTTTGATTGaacctttgttttctttggaggAGAAATTGGTCACGGTCCACATGTATAACCCTCATGTGCCGATACGAGACGTTGAGTGTTTTCTGGCCCGTTACTGTATGATTTTGCGTGGAGCGCTACCTCTCAAGAATTGGAGGCGTTCTTCATCCCCCGGCCAGGTTTTCTATCGGCCCGAACCGTGGCTATTTGACCTATGCAGGACAGCCAGCCAGAGTATTGCAGATGGTGCTTGGTCTACGGTCACGCTTCTACTGCTTGTACGGCTCCTGGCTGTAGGCACTGTGGGGCTGCTGACCATGTGGGCCGTGAGTGCCCTCTCGGGAAGACCTGTAGCCTGTGTGGGAGTGCTACCCATCTGTATAGGGATTGCCCTCGACGTGCTGTTCGGACGGCTTATTCCGGGACTGCTGCAACTGCGGCTGCTGCCGCAGGAGAGGGAGTTCCTCCTGCTGTGCATTTGTTCTTGTGTTTGGTCAAAATGTCTAGAATGTAAGACCACGGCTTCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000044 True 2778 mRNA 0.55 14 744343 787026

Neighbor

gene id symbol gene type direction distance location
AMCG00000041 NA coding upstream 405 729902 ~ 743938 (+)
AMCG00000040 NA coding upstream 174639 501495 ~ 569704 (+)
AMCG00000039 NA coding upstream 315517 428554 ~ 428826 (+)
AMCG00000038 LOC102299462,LOC102207316,LOC108269999,LOC100697238 coding upstream 325438 392178 ~ 418905 (+)
AMCG00000034 NA coding upstream 407926 317564 ~ 336417 (+)
AMCG00000047 NA coding downstream 58 787084 ~ 787849 (+)
AMCG00000048 NA coding downstream 28915 815941 ~ 816517 (+)
AMCG00000051 NA coding downstream 99374 886400 ~ 886792 (+)
AMCG00000049 NA coding downstream 99880 886906 ~ 898545 (+)
AMCG00000052 NA coding downstream 170680 957706 ~ 978544 (+)
G147314 NA non-coding upstream 258882 482114 ~ 485461 (+)
G147313 NA non-coding upstream 270836 470695 ~ 473507 (+)
G147292 NA non-coding upstream 357390 386290 ~ 386953 (+)
G147288 NA non-coding upstream 387355 356772 ~ 356988 (+)
G147286 NA non-coding upstream 404829 337466 ~ 339514 (+)
G147380 NA non-coding downstream 41429 828455 ~ 1174302 (+)
G147393 NA non-coding downstream 117944 904970 ~ 1069770 (+)
G147405 NA non-coding downstream 153832 940858 ~ 941911 (+)
G147466 NA non-coding downstream 401782 1188808 ~ 1189042 (+)
G147551 NA non-coding downstream 702554 1489580 ~ 1492313 (+)
G147311 NA other upstream 245832 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 489902 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 639981 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 706568 28694 ~ 37775 (+)
G147416 NA other downstream 276059 1063085 ~ 1116950 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 1248997 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 1616704 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 2903746 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 2933959 3720985 ~ 3724316 (+)

Expression


Co-expression Network