AMCG00000050


Basic Information

Item Value
gene id AMCG00000050
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 890112 ~ 940835 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000050
GTAGTCATGTCGTCTGCAGTCGTTATATAGTGCCATCTAACATCTACCGTAAATagAAGCACCCTCTGCCTCAGTGCTGGAGACCATTGCGGACAGTGAACACAGTGGACACAGCACAGCCCCGTCGCTGGGCATCTCACGGCGATGGAGGGCCTCATGTCCCGCGGAGGAGAAGCCCCGGGGACGCCGGACAGGGCAGAGTTGTACGGGTGAAGATAAATGAATTGCAGCCAATCAGAGCACGCTACGAAGTTCCAGACGTTCTCATTGGAGAACCCGTCCGAGAGCGGCTGAGTGCAGAGAAAGCAGACAAGGATACCCTGAGACTTAGCTGGAGTAATGGCCAGTACCAGATGCGGATCACCCGGTCCCCTTTCCAGCTGGAGGTGTTATGTGGAGGGGAGGTGATGGTCTTCACAGAAGGTTCTGGCGGGCCCTACAGGCTATACAATCTGGATGTGTTCGCCTATGACATTCACAGTAAGCTGGGCCTCTATGGTTCTGTGCCCCTTTTGCTGGCCCACAAACTGGAGAGGACCATTGGCATCTTCTGGCTGAATGCCTCTGAGACCCTCCTGGACATCAGCACTGTCTCTGAAAACCTGGTGGCCAGTCCCTCACTAGCGAAAAGGAGGAAACTGCCCTCCCAAACTGAGCTCCACTGGATGTCAGAGAGTGGCATCATTGACACCTTCATTCTGTTGGGCCCTTCACCTTCCGACATTTTCACACAGTACGCTGGACTGACAGGCTGGCAGGCTCTGCCCCCCCTCTTCTCTCTGGGATACAATCAGTGCCGCTGGAACTACAAAGACGAGGCTGATGTGAGGGCTGTGGACCAGGGATTCGACCGCCACCACATCCCCTATGACGTCATCTGGCTGGACATTGAGCACACCCAGGGCAAGCGCTACTTCACCTGGGACCGCCAGCTCTTCCCCGACCCCCCCGGCCTGCAGTGTTACCTCCAGGATAAAAAACGCAAGCTGGTGGTGATCAGTGATCCTCATATCAAAATTGACCCAGAGTACTCGCTGTATGCTGAGGCTAAAAACTGCGGGCACTTTGTCAGAGAAGGCAATCCATACGAGGGCTCATGCTGGCCAGGCCCTTGCTGTTACTTGGACTTCTCCAACCCAAAGACGCGGGACTGGTACAGCAGCAAGTTTGCTCTTGATAACTATGAGGGTTCCACAGATTCCCTGTTTGTGTGGAACGACATGAATGAGCCCTCAGTCTTTGACGGGCCAGAGCAGACCATGCCGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACAGGGAGCTACATAACCTCTACGGTTTTTATCAGCACTGGGCCACAGCAGAGGGCCTAACTTGGAGGTCAGGTGGCACAGAGAGGCCCTTTGTCCTCACACGCTCCTTCTTTGCTGGATCCCAGAGGTTTGGAGCTGTTTGGACAGGAGACAATGTGGCCACCTGGGACTATCTGAAAATCTCCATCCCTATGCTGCTGACACTGAGCATCACTGGAATCTCCTTCTGTGGGGTGGATGTGGGTGGCTTCTTCCATGACCCTGAACCGGAGCTGCTGGTACGCTGGTACCAGGCAGGAGCACTGCAGCCCTTCTTCCGAGGCCACTCAGCCATGCAAACAAAGCGGCGTGAACCATGGATCTTTGGGGAGGAGGTGACAACCATTATCAGGGCAGCCATTTCCCAGCGGTATTGCCTGCTGCCCTACTGGTACACCCTCTTCCATCAGGCCCAGCTCTCAGCCAAGCCACCAATGAGGCCGCTGTGGGTAGAATTCCCCAAAGAGCCACAGACCTTTGCAGTGGAAGACCAGTACATGATAGGAAGTGCTTTGTTGGCTTGCCCTGTGACTGACCCTGGAGTCAAAGAGGTGAAGGTTTTATTTCCAGGATGTGGGGAGTACTGGTACGATGTTCACTCTTCCCAGATATTCAGAGGAGGCAGGACAGTCAATGTTTCTGTAACCCTCGACAGTGCGCCAGTCTTCCAACGAGGTGGCACTGTGGTACCCAGGAAGAAGGAGGCTGGCACATGCACAGCTGACCAGAACAGTATGCCATTCTCTCTGACTGTGGCACTGGACCCCAAGGGCAGTGCAGTGGGAGACCTGTATATGGACGATGGCCATTCCTTCAACTACACAGACAAGAAAGAGTTTGCTCTGCAAAGATTTACCTTCTTCAATGGTAAACTGCTCTCCAGttgttCTGACAACACAGGGAAGTTTGAATCCAGATGCTCAGTAGAATGTGTGCAGTGGATGGGAGTCAGAGAGAGGCCCTCTGCAGTGACTGCACAACTTTCTGGTGACAGGGCAGAGAACGTGCCTTTTACTTATGAGGAGAAGAGGTCACTGTTGACAGTTAAAGGTCTGAAACTGGGAGCTGTGCAGAACTGGCAACTGGAGATAAAATAATGATCCTGTGTGCAGCTGTTTTTATGTAAAGGCTTCTTAGTCCACAAAGGAATCAGGAGGATGTAAAATGCTATAGTTTGACTCATGTTCCTGTTTTAATAAATCGTATTAAACAACA
>TU185516
CGGAGCAAACACTGCCTGTGTAGTCATGTCGTCTGCAGTCGTTATATAGTGCCATCTAACATCTACCGTAAATaggtaaatacatacattaccGGTTTATTGTGCTGTAGTGTTGGGTGAATTTATGGTGTCTTATATAAAGGgaacacaacaaaattaaactatttgCGCAACGCGTTTTAAGCAATAATCAATTCGAGACCATCAGTTGGGGAACAATACGACTAATGTTTATTACTTTTGTTGAGTTGCATCAAGTAGCCTTATGATGATATTTTTCATGCTGGTCTACAAGACATGTATTTGACGTTACGctcttttaaatacaaatactacaaTTCCCAGAAGCACCCTCTGCCTCAGTGCTGGAGACCATTGCGGACAGTGAACACAGTGGACACAGCACAGCCCCGTCGCTGGGCATCTCACGGCGATGGAGGGCCTCATGTCCCGCGGAGGAGAAGCCCCGGGGACGCCGGACAGtgtaatCCCTGAGAATGAGGGAAAGGAGAAGTTTAAGAAATACAACCACATTGCATTTTACAGGAGGCAGAAGGAATTGCAGCAGGGATCTTCTTACTATCGCCCTCTAATGGACACTTTGGAAATGTCGGAGAGGGGAGCAGAGCTAGAGCTAattcacacagagacagaggtcTGGCATCTTAGAAGTTTAAGTAGTACTGCAGTCCTGGAAAACCACAGTGCCAGATATTAGACATCATAGACATGCAGAGATGGAGAAattctgaaattgtattatCTAAATGACAAAATGGAGATGTATACTACTTCATCCACTGATCAGCTTTAATGGCACACCCTTCAGTCATGTCAATTTTTCTGCAATATAATTTTTACATAAAGAATAAGAGGTATTTCAGAGGTATTGTGTGAACAATTAGGCCATATTACTCTTAAATACTGTTTTCCTCCTGGCTGTGTAATGTTCTGCCATGagttaaaattacattacacaAGCACTTGcatgtacatatttgttttcaaatgtatgtctTCTACTGAGTCCTTCACAACCAATCACATGTAGTAACTCTAGAGTAAAACTTTGAAACCCCCATGTTTAGAAGATAAGTGTACTTCTTTATTAAAAAGATTCTGGAGTGCTGGATGTGTTCTATAGACTGGATTGAGCTGGTCTCCAATCCCAGCTATATTATATAGCCAGTTTAGCCTTTAGCAATGGAGTCCCCAGTGAGCAGCACACAACTGGCCAAGAGTTGCTAAGGCAGGGTGGGTAGAAGTAGGCTGGCTAATCCTCAATTCAGTGCACAATTTCAACCCCTTGTGGCATGTGCTTGTAGGTTCAGATTGTTACCAGATCCAGTTGCATCAGATCCTTAGTGTAATAGCAGGCCTGAGGTTTGTGATGCGAAACATAGTAGATAGCTTTGAAGACgtgatatttaatattgaataatgCATGCTTTACCTTATTGCCCCTGCACAAGCACAGAGTTGGGGCTGAGTTGACTAAATTCCCTGGAACAAAAAGgtgtaaataattgtttatatttatttgctttgttgtgtgGTTATTCGTGGTTAGACAGATGATAAGCATTTCCACCAATCCACGTCTTCTTCTCGTGTTTCATTGGTTGATGTAATTTTTAACACATGTAAAATCTGATCAAATCGAACTCGTTTCACAGTAAATGTACATGGTGGGAAAGGGAATATGAACACACTCGGGTTTTTTTTGACGTACGTAAAGATCGGATACATCATCGGATCgagtgtgtatgtaaatattgtgcAGCTATGTATTCTCATATTGTCTCTcatttaagaacaaaaacaacattctaCCTCCATAGTCCAGTACTGGAATGCCGTTGAAGCTATGTGATGTAGAAAAGCTTGTAAACGCTGaatttaatgtgtttgctttatttttcattatttatcaaaacagtttagcacctttcaaactgaagagtaaaacaggtttgtgttttgagaacaatgtaaaaacaccttTTGCTAGTATATGCACTTTATAAAAcccttaatttttttcacattttctcttggttttataactgccatctcaagttgttttaaatagaGCATTGTGCAAGATGAGGAAAAacattagtttttgttttataaaacacttgcattttACGCTggaatttatttgtttttatatctgaTTAATCAAAGTAGTAATCGACAGATTAATTGATTATCAAAATAGTCAAATAGTCATTTGCCGCAGCCCTAATTAACACAAACATTCTAACATTAATAGTAGTTCTGCCTACAGCCTGGGAGTCTTCAAAAACGTGGTGACTGATTTGTTTGTAGTGTTCTTGTTCAGAAACCTCCAGAATACAGTCAAGCACTACAGGTTCAAACTTACATTCTGCAATTTAGAATTGCTGGTCAAATAAATCCTATTATcattttcctatttttgtccCCACAATCCTTTCTTAGGGTGGAATCACTCTAATCTGCTCTCCCTTATTCCTCATATATGTAGGTCCGCtttcttctctgtgtgtgtgccattCAGGGCAGAGTTGTACGGGTGAAGATAAATGAATTGCAGCCAATCAGAGCACGCTACGAAGTTCCAGACGTTCTCATTGGAGAACCCGTCCGAGAGCGGCTGAGTGCAGAGAAAGCAGACAAGGATACCCTGAGACTTAGCTGGAGTAATGGCCAGTACCAGATGCGGATCACCCGGTCCCCTTTCCAGCTGGAGGTGTTATGTGGAGGGGAGGTGATGGTGACCCTCAACTCCCAGGGGAGGCTGTGTTTTGAGACACTGCGGGATCCACCAGATAAAGGGTATGCAAGATAATCTAGAGGTGATTCTTAGATGGGTAGATCATATAGTGTGTTCttgtgataaggagacccgcatcgTATCTAGCATGCCTGTTGCTCACggtgcagatctccctaaactactTTGGGAGCTACTGCCCAAAGCTGGGGGGAttcactggtcatggtccacattggaaccaatgacataggaggGGGTAGgccagaggttctgcaagacacatttcaagagttaggaaagaaactaaagagcagaacctccatggtagttttctctgagaTACacatgccaggccagggagacaggtaGCGATTCTAAAGTtcaacatgtggttgaaatcctggtgtagagAAGAGGGCTTCAGATTTAtggggcattggtctttcttctgggatagatgggatcTGTACAAACTGCAAGGTTCTACACGGTCTGCATCTAAACAGAAGTGGGGCTAAAACATTGGGACAGGtaatgtgcagagtaattgaggatcttttaaactagggaccagggggacagggagctctgacaatgggagatgttttactaaggaaagaaaacaaagggaatctgctagtaggaaagtcctgaaatgtttgtacctcaatgccaggagtataaggaacaagatctTAGACCTTGATGCCACAGTTCTGGCGTGTGACCAGCAGCGGCTCATGGCAATTAATACTGGTGGGGCAGTGCCTGAATTGCTAACCATGCCCAGTTTTGAAATCGTTATTTGAATAATGACATCACAATTAAATGTCACCTGTGAGTCACCTATGACTGAATTGTAGGCTATAAGAGAATAGACAGTAAAAAGTCTATTGAGACAGTTAGTAGATACAAAATTCTGCAGTTGCCTATATACTTTAAAGATGGATTTCCTTTATTCTATTACATGTGTCCCAAACAAAAATGGCATGTGATAAACTAAAGTCTAAAAATAGCCTACTACAATGTATACgtattttcacaacaatgagaaggatatgtcagtttttaaattgataagATTTCAAGAGGGCTGCTTCcctttttcagtttattcttgTGTTTCGTGTTTCTTAGTCTGTTCTGAAGTTTCAAATCTCTCACCCCTGTGTTAGTCCACTATCTTCTGCTAACAATGACTAGCATTATATGCAGGGAAAACAGAATACTTTATTCCGTGTAGTAGGACTGCTCAATTAATCGAATATTGATCTCGATTACGATTTTGGCTTCCCACAATTAAATGAACATGATTGACTGCGATATTGACGTTTAAAATGCGTGCTCCGTTCATAGAAAACTCCGCCGCATATCAAATCAAGCGCTTCATAAACTTACAGCCAGCCACGAGGTGGCGATTTGGCTGCGCGCGCACCCTCCAGCGACAGCCTGTGCAACAATTTCCTGGCTGTTGCGGCTGCAGTCCAGAGTAGAAGAGTAATATACAACAGATGTAGTGACCTGAGGGGTGCACTACGAAGcgaggtaactggcttatccagCTAAGTTCAGGAGTAACTTTGCGAGGTCGGGTGTAACTTCCCGGTTAACCCGCACTACGAGAGGTGGATAAGTTTTACCTGAGGTCTGCGGTCAGGGCAATATACGCGCATCTCTACACTGCTCCAGCAGGGCATGTTCGTGGTTAACTCGGTGTTACCCTGTATAAGCACCGCCTCTCTGCCACAGTCTCTTGTCGGGACCCAATCGACACTGGGCCCgggttgtgagaggctcactCCGCAGGGCGAGGGTGTGTAGAGATCGTGCAACTCCTCTAGCTCACCCCGATGATGCTCTCTATGAAAGATAGCGATTCTCATCTGAGGGAATTCAGTGTCGTTGCTGTTTCTAGGGCCAGACGTCTCAATGCCAGTTGCCGGAGTGATGCcctcactgttgaacagacagtgtgTCTTGCTGTGCGGTATTTTGCAGCGGACACTTCATGTATCCCATCGGTGATGCTGAACCTCTGAGCAGCAATACTGTCTGCCGTGCAGCTCGCAAGGTGGCACTTGCTCTCACTGAACTGCTGATGCATGTGTTGTGTTCCCTGGCCTTTGAAGCCTTCTAAAGATCAAAGATAAAAATACTTGTTCTATTTTAATAAGCATAGG

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000050 False 2550 mRNA 0.53 21 890112 940816
TU185516 True 4944 lncRNA 0.42 4 932723 940835

Neighbor

gene id symbol gene type direction distance location
AMCG00000046 NA coding downstream 30397 840706 ~ 859715 (-)
AMCG00000045 NA coding downstream 49466 839777 ~ 840646 (-)
AMCG00000042 NA coding downstream 180661 703657 ~ 709451 (-)
AMCG00000043 NA coding downstream 296499 573375 ~ 593613 (-)
AMCG00000036 NA coding downstream 525444 343411 ~ 364668 (-)
AMCG00000065 LOC106591853 coding upstream 363104 1303939 ~ 1342353 (-)
AMCG00000062 NA coding upstream 451974 1392809 ~ 1441915 (-)
AMCG00000058 churc1 coding upstream 543685 1484520 ~ 1488089 (-)
AMCG00000059 NA coding upstream 548636 1489471 ~ 1544026 (-)
AMCG00000064 NA coding upstream 644711 1585546 ~ 1611211 (-)
G147420 NA non-coding downstream 2233 802811 ~ 887879 (-)
G147368 NA non-coding downstream 149503 739606 ~ 740609 (-)
G147358 NA non-coding downstream 209929 660358 ~ 680183 (-)
G147305 NA non-coding downstream 457805 428423 ~ 432307 (-)
G147248 NA non-coding downstream 664779 195473 ~ 225333 (-)
G147419 NA non-coding upstream 231481 1172316 ~ 1174302 (-)
G147467 NA non-coding upstream 247964 1188799 ~ 1189043 (-)
G147588 NA non-coding upstream 672498 1613333 ~ 1619067 (-)
G147639 crip1,LOC107600860,LOC103034058,LOC106611282 non-coding upstream 879526 1820361 ~ 1829348 (-)
G147645 NA non-coding upstream 910088 1850923 ~ 1851379 (-)
G147324 NA other downstream 404529 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 497630 387118 ~ 392482 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other upstream 2611324 3552159 ~ 3558901 (-)
AMCG00000161 NA other upstream 4130632 5071467 ~ 5077246 (-)
G148395 NA other upstream 4397974 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 5063351 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 5104830 6045665 ~ 6067184 (-)

Expression


Co-expression Network