AMCG00000055


Basic Information

Item Value
gene id AMCG00000055
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1243198 ~ 1294765 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000055
ATGCCCTACACGCCGTCTGGCTATTTCTGCGACCGCCTGATCCGGGAGAGGGAAAGGAGGGATGGGGAAGGCTCCCTCAGCAAGCCCCTGCCCTTTGTGGCCCAGGACTTCACCTCCCTCAAGCAGGAATGTCTGAAGAAGAAAGCCTTGTTTGAGGATGACTACTTCCAGGCCTCAGTGGAGTCCCTGGGCTACAAGGAACTGGGGCACAAGTCAAACAAGGTCAAGAACATCATCTGGAAGAGGCCCAAGGAGATCTGTGAGAATCCCCAGTTTATCATTGGGGGTGCCAACAGGACTGACATCTGCCAGGGAGATCTAGGGGACTGCTGGCTTCTGGCTGCCATTGCCTGTCTGACTCTGAATGAGAAGTTGCTGTACCGGGTTATCCCTCCTGACCAGAGCTTTGTGGACAACTACGCTGGCATCTTCCACTTCCAGTTCTGGCGCTATGGCGACTGGGTAGATGTTGTCATTGATGACCGAATCCCCACTTTCAACAATCAACTGGTCTTTACCAAGTCAGCTGAACGTGATGAGTTCTGGAGTGCTCTGCTGGAAAAGGCCTATGCCAAGCTACATGGCTCCTATGAGGCCCTTAAGGGTGGCAACACCACGGAGGCCATGGAAGACTTTACAGGGGGGGTGACAGAGTTCTTCGAGATGAAGGAAGCCCCCAAGGAACTCTTCAAGATAATGAAGAAAGCCCTGGAGAGGGGATCCCTGATGGGCTGTTCCATTGATGACACAATGGGCATAACCCCAGGTGTCCCAGCTCCCAGTGTCATTGGTCAACTCATTGATAAGATGATCACCGATGCAGAGGCTAGTAAGAAAGATCCAGGAGAATCACCTGCTGGGACTCGTACTGTCACAGGATTGGTCAAGGGCCATGCCTATTCTGTGACCGGAGTTGAAGAGGTGAAACAGACACAACACAAAGAGAACAAAGTGCGACTTGTGCGACTCAGAAACCCCTGGGGGCAGGTGGAGTGGAATGGACCCTGGAGTGACAACTCCAAAGAGTGGTCCACCATTTTGAAGGCTGAGAAAGATAAGCTACAGCATCAGGTGGCAGAAGATGGAGAATTCTGGATGTCGTTTGAGGACTTCAAGAAGAACTTCACCAAGAtcgagatctgcaacctgactCCTGACGCTCTGGAGGATGACAAAATCCACAAATGGACAGTGTCAGTGAACGAGGGCCGCTGGGTGCGGGGCTGCTCAGCAGGGGGCTGCCGTAATTACCCAGACACCTTCTGGACAAACCCGCAGTACCGACTGCGCCTACTGGAAGAAGACGATGACCCCGAGGACAACGAGGTGGCTTGCACCTTTGTGGTTGCACTCATGCAGAAGAACCGCAGGAAAGAGCGTAAGATGGGTGCCAACCTCTTCACCATTGGATTCGCCATCTACGAGATGCATGGCAACAAACAACACATGCCCAAGGATTTCTTCCTGTTCAACGCTTCCAAAGCACGCTGCAAGTCCTACATCAACCTGCGCGAAGTGACGCAGAGGTTTCGCCTCACTCCAGGGGAGTATGTAATCATCCCCTCCACCTACGAGCCCCACCAGGAGGGTGAATTTATCCTCCGGGTCTTCTCTGAAAAGAGGAACACCTCAGAGGAGATCGAAAACAGGATTGAAGCCGACCATCCAGTTAAACCCAAGAAAAAGCAAAAGCCCATCATCTTTGTTTCGGACCCAGCGAACGTCAATAAGGAGATAGTGCCAGAGACTGAGTTGCTGGAAGAGGAGTTAAAGAAgcagaaactgaaagaaaaaaagaagCCAGCCCCAGCCTctgcaggagaggagagtgAGGAGGACAAGCAGTTCAGGACGATCTTCCAGCAGATCGCCGGAGATGACATGGAGATCACAGCTAATGAGCTCAAGAACGTGCTCAATAGGGTGGTCGCAAAACACAAGGAAATGAAGACAGAGGGCTTCAGCTTGGAGTCCTGCAGGAGTATGATTGCTCTCATGGATGGAATTTTTAAACACTACGATGCTGACCAATCTGGAAGCATCAACAGCTATGAGATGCGGAATGCTGTCAATGATGCAGGCTTCCGTCTCAACAACCAGCTGTACGACATCATCACCATGCGCTATGCCaatgaaaacatgaacattGACTTTGACAGCTTCATCTGTTGCCTGGTCAGGCTGGAGGGGATGTTCCGAGCATTTCAGGCTTTTGATAAAGATGGAGATGGCTTAATCAAACTCAGTGTCCTGGAGtgGCTCCAGCTGACCATGTACGCCTAGTGGTGAActacagtagcagcagcagtaggtGAGCTGGACTCTCCAATCGGGATTGACGACAGACTACGCCAGCCTTTACCTCATTTTTCACAGGAGCAGCCTCAGCTGTCCATCAGACTTTTACCACACTCTAGCCCCCTATTTCCCctgccaccccaccccaccccaccccaccgcCCTTCGTCCAGGGTCTGCATCCCTCACTGCAGTCCCTCACTGAGCACCTCCTTCTCTTTTCTGTTGTATAACTCACATTGCCATAAGTCACTGCCTCCTCCACTATCTGCCATGTAGCAAATCCCCAAGCATTTCCCTCTCAAActtcactgtctctctctttcccccagTAATTATTGTAACACATTACCTGATATAGTGTACCTTTTTCCCTCATCTGCTGAGACACCTTTCCTGCACCCCACACATCATAACAAAAGCCAGTGTGTTCCTGCTGTCCTCAACTTCTTCAACTGGATCAACCATAGCAGACCCCCCACCCACTATCCCTTTCCCCAGCCTCATCTATTAGCCTCAAGATCTCATTAATCTCTACATGAACTACAATTGCTGTTTTTGCATCCTTATTTTCTTGAAAGCTGTTAATAACAGACTTGAGTAAACAGGTGtaatcaaaacaaatgct

Function

GO: NA

KEGG:

id description
K08573 CAPN3; calpain-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000055 True 2926 mRNA 0.51 22 1243198 1294765

Neighbor

gene id symbol gene type direction distance location
AMCG00000054 NA coding upstream 78794 1139043 ~ 1164404 (+)
AMCG00000053 vps39 coding upstream 200595 991040 ~ 1042603 (+)
AMCG00000052 NA coding upstream 264654 957706 ~ 978544 (+)
AMCG00000049 NA coding upstream 344653 886906 ~ 898545 (+)
AMCG00000051 NA coding upstream 356406 886400 ~ 886792 (+)
AMCG00000056 NA coding downstream 66612 1361377 ~ 1383054 (+)
AMCG00000057 NA coding downstream 398387 1693152 ~ 1719606 (+)
AMCG00000066 NA coding downstream 446044 1740809 ~ 1781771 (+)
AMCG00000067 NA coding downstream 565743 1860508 ~ 1860744 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding downstream 718782 2013547 ~ 2034642 (+)
G147466 NA non-coding upstream 54156 1188808 ~ 1189042 (+)
G147380 NA non-coding upstream 68896 828455 ~ 1174302 (+)
G147393 NA non-coding upstream 173428 904970 ~ 1069770 (+)
G147405 NA non-coding upstream 301287 940858 ~ 941911 (+)
G147314 NA non-coding upstream 757737 482114 ~ 485461 (+)
G147551 NA non-coding downstream 194815 1489580 ~ 1492313 (+)
G147564 NA non-coding downstream 291292 1586057 ~ 1586324 (+)
G147565 NA non-coding downstream 293312 1588077 ~ 1588295 (+)
G147579 NA non-coding downstream 318545 1613310 ~ 1615951 (+)
G147580 NA non-coding downstream 324407 1619172 ~ 1620075 (+)
G147416 NA other upstream 126248 1063085 ~ 1116950 (+)
G147311 NA other upstream 744687 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 988757 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 1138836 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 1205423 28694 ~ 37775 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 741258 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 1108965 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 2396007 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 2426220 3720985 ~ 3724316 (+)
G148040 NA other downstream 2465414 3760179 ~ 3760624 (+)

Expression


Co-expression Network