AMCG00000057


Basic Information

Item Value
gene id AMCG00000057
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1693152 ~ 1719606 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000057
CTGGACTGTGTGCGGAAGCAGGAAGCGCTGGGTGAAGCTGGGAGTGTGCTGGCCAGTAAGGGCATGCCCTAAATTATGTGCAATGGGGATATTTCGCAGACTAGTAGTATTAGCTTGCCACTAATTTCACCTGCAGCTCCTGTCGCTCGCTCattgttttcccctttctttccGAGCCTATCGACGAGGATGCTTAAAATATGCAGCAGCTTGGTGCTCACAGGTCTGGTATCTGCCTGCCTCATATCGTTGCTTCTGGAAATCTACGATACCGCCCAGCACCCCAAAAGCACCATCATCAAGCCCACTCGCAGAACAGTTCGTGGGCAGAGCTGGAATAGCATGCCTCCGTACCCTGGTGCGCAACTGGACAATATATTCTGGTTTGTGCAGGTGTCGGACATTCACATCAGCCGCTTTCATGACCGCAGACGAGCCCCTGATTTTGAAAAGTTCTGCACAGATACAATAAACATCATCAAGCCAGTTCTTGTCCTTGCAACAGGGGACTTGACGGATGCAAAGACGGAGAGCAAGGTGGGTTCCCTGCAACACGAGGTGGAGTGGCAGGCCTACCATAACATCCTGAAGAGGTCCAGAGTTCTGGAGCGTACCAAGTGGATCGACATTCGGGGCAACCATGatGCTTTCAATATTATATCTCTGGAGAGTGTCAACAACTACTACAGGAAATACTCTGCTATTCAGAAAGAGGGCTCCTTCCACTATGTTCACCAGACATCCTTTGGGAATTATTCCTTTATCTGCTCTGATGCCACCCTCACCCCAGGACCAAAGAGGCCCTACAATTTCTTTGGCATTTTGAACCAGACTCAAATGGATGTGCTTGCAGGCTTTGAGCAGGAGAGCCACAGCATGGCTTACCTGTGTGGGCATCTACACACGCTCGGGGGTCTGATGCCGGTGTTGCACAGTCGACACAAACAGGGCACCctagagctggagctgggggaCTGGATGGACAACAGGAGTTTCTCAGACCTGAAGTTTGAAGATTGGCCAGCTATTGTCATCACCAACCCAAAAGCTGCTCTGTACCTCAACCCTGGAGTGGAGCCTGTCGGCAGAATCCGGCATTCCACACACATCAGGATCTTGGTTTTCTCGGAGGCCCCAGTCACTGCCGTCTATGTGAGTATTGATGGAACACTTCTGGGAGCAGCTCAATCGTTAAAAGCACCCCTCTATGTGCTATACTGGGACCCTCAGAGCTATTCTAAAGGACTCCACTCAATCCAGGTCAAGGCTGAGGCTCAAGTCATCTTCCTGTCCCTGGTGCTATTTAACATTGCTTTGATTGTGGTCTTCCGTTTCCGGGGTCCCCCTACTCTAAGAGGATCTTCAGGTTTGTTTGCACAGGTGTGTCTCGCTCTTCACCTCATCAGTAAGACGAACATCTTCTTCTACTCCATTGTCCTCTTCAACCTCTGCACTGCCTGTGGGCCATGGTTTATTGGTGAGGTGATTGACGGCCACAGTGGAGCCTGCTTTGCATTCGGGGTTTTTGTGGATGGACACTTCCTGGAGGGAAGCCTAACGTTTGTGGTGGGAACCATGCAGGTGGTTTTCTTCAACATGCCCCTGACCTGCTACCTATGCTGGAGCCTCAATCTGCGTTGCCGCGGGAACTGCTTCCGCTCACATTTCAGGCGCGCAGGCAGGCTGCAGACACTGGCGGTCAACCTGCTTATGCTGCTCCTGCTGGTCTGGCAGGCCTACTCCTGTTACTTCCTATTGGAGACGTATGGCCTTCTTGCTTTCTTCCTGTCTCCAGTGCGCACCTGGGCCCTCGGCTTGGGCCTGCTGCTCATCCACCGAGCCTGGACCTGCCCACCTCTGCGCCTCAGAGAATACACAGCTGACACCAAGGCCACCACCACCTCTTGACAGTTGcccattttaatgtgtgtatatatatacattttgtttgtattattgctagtttattttcagtgcattttttacaaaatgaaacaatcaaagAGCTCCCTGTATTGTTTagaagtttaattttgtttagatGAAAGAACAAGTGACAATCCACATTCCTGATAACTGCCCCCTCCCAAAATACTCCTCTCTACATGGCTTAAAATGCTTAAACAGAGCAGAAGTAAACtcaaaaatgaattttaaacaaacaaaacaaaaacaagatgtatatatttgatcCCTAAGCTGAGAAGTAATTTCTCCTTTGCAGCTGTCTCAGGAATACAAGGCATTCGTAATATGAAACAATCACATTTATCTTAAACTGCACCACTGCCAAGTGATCAAAGCAAAGtcttaaatttgtatttttctaattatataGTCCTACATACTATAATGATccttttaaactgcttttaaagTAACAGAATCAGCTGAATGATTGGGGACATGAATGAATGTCtcctttaaaatgcaatgtatacATTGGGCATGCAATCATTATTTATGACCAGTCAATAGTTCTCTGGGAATTAAATGTGAAGAATGTTGGGCAAAACAAGATGTATGTGTGCGTCTGTGCAAAACTGTACAGTATTTCCAGACTCTGAGATGCATGCGTAGATAGGCAGACCACTGATTGCATGTCGAGGTAAGCAATTTCCTGTACATTTCTCTCTTTTGAAATCAATGCTAAGTACTCAGAATACTGATCTCATTTTCATGTGGCCTTGTGGTATGAGGAAAGCAAAACACCAGATGTTTGAAAGAACTTCATGAAGCATAAGAAACCTGTCATCAAAAGTAAGGTACAGCACCATAAAAGGTTTAATTTCTCCATACACCCTTATACTATCTGTTCTGACATCTGTTTTATGCTACATATACAGTCACCTCTGTTACctgttttgcacatttattgccagtaaaaacacatttcaaaattgtaCTGTAGAATCAAATGCATCTTACACATTTTAGGAAGGCAAAATATCACATCTGTAGattacaaatgtttgttttgcattcagttatttataCAGACCCAGGTTTCTAATTAGGGTTCTTACTTTGTCTGAATATTGCCAGTGAAGATTACACGTTTTTGATCGAACAAGTGCCAACTTCTTGGCTTAGATATTTCATTCTGCTTCACTGTCCAGATAAGGAAGTGATTTATATTTGCCACAAAATAAGCACAAAGTTAAAGTAAATTAAGACTTTATTTTAGAATACCTCACaagttttttctgttttattcctATTGTCATACTACTTTCTAAATGTGTGCATATCTTAAAACACAAAGATTGTCATGTAATTTCATTGATAATAACTTTACAGTGTAATCCAGtgtaatcttaatttaaaagcattactaatatacagatgggtgacaaatttaaaggaacaacctgaataaatgagtggaggaacataatgagtgcagatgcctccaaacaggtgtactgcatgatgcaattaacatcctatcttgctctgtggcatgtataaaaatgctaagcaggcccagttgaccacgattttggatcaagatggcagaggaaaggatctaagtgactttgaaagaggggtcattattggggcacgaatggcaggagctggttagtgtttcaataggaacagtgactaaagttacatctgcatttagatctatgggaaagacatcagtaaatagggttggaaattgtggtcgaaagcaA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000057 True 3680 mRNA 0.44 13 1693152 1719606

Neighbor

gene id symbol gene type direction distance location
AMCG00000056 NA coding upstream 310098 1361377 ~ 1383054 (+)
AMCG00000055 NA coding upstream 398387 1243198 ~ 1294765 (+)
AMCG00000054 NA coding upstream 528748 1139043 ~ 1164404 (+)
AMCG00000053 vps39 coding upstream 650549 991040 ~ 1042603 (+)
AMCG00000052 NA coding upstream 714608 957706 ~ 978544 (+)
AMCG00000066 NA coding downstream 21203 1740809 ~ 1781771 (+)
AMCG00000067 NA coding downstream 140902 1860508 ~ 1860744 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding downstream 293941 2013547 ~ 2034642 (+)
AMCG00000070 tmem229b,LOC107752730,LOC107708331,LOC102785226 coding downstream 395055 2114661 ~ 2115167 (+)
AMCG00000071 NA coding downstream 408978 2128584 ~ 2135898 (+)
G147580 NA non-coding upstream 73077 1619172 ~ 1620075 (+)
G147579 NA non-coding upstream 77201 1613310 ~ 1615951 (+)
G147565 NA non-coding upstream 104857 1588077 ~ 1588295 (+)
G147564 NA non-coding upstream 106828 1586057 ~ 1586324 (+)
G147551 NA non-coding upstream 200839 1489580 ~ 1492313 (+)
G147635 crip1,LOC107600860,LOC103034058,LOC106611282 non-coding downstream 100751 1820357 ~ 1829543 (+)
G147688 NA non-coding downstream 571534 2291140 ~ 2358137 (+)
G147689 LOC107575789 non-coding downstream 581881 2301487 ~ 2368445 (+)
G147687 NA non-coding downstream 630435 2350041 ~ 2354058 (+)
G147735 NA non-coding downstream 759104 2478710 ~ 2478958 (+)
G147416 NA other upstream 576202 1063085 ~ 1116950 (+)
G147311 NA other upstream 1194641 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 1438711 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 1588790 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 1655377 28694 ~ 37775 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 316417 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 684124 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 1971166 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 2001379 3720985 ~ 3724316 (+)
G148040 NA other downstream 2040573 3760179 ~ 3760624 (+)

Expression


Co-expression Network