AMCG00000071


Basic Information

Item Value
gene id AMCG00000071
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 2128584 ~ 2135898 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000071
ATGTCTAATAAAAAGTTGAGAAGAACTGGCTTGCCGTCTGAATTGTGCGAAAGACTGAGCCGCCACCAGGTCGAGACGTGTCGGGACTTTCTGTCTCTCATGCCACTGGAGCTCATGAGAATGGCTGGTCAGAGTTTCCAGCAAGTTCAGAAACTGCTCCACACAGTCTGCCAGGCGTGTGCCCCCAAAATGTTCACGGGACTGGAGCTGAGGAACAGGCCCACCTGCTCTTATTTCCCCACCACTCTTCAGGGACTGGACCGAGTGCTGCGAGGAGGCCTGGCCTGTGGGACCCTGACTGAGgtgaCTGGCCCCTCTGGCTGTGGAAAGAGTCAGCTGTGTATGATGCTCAGCGTTCTGGCCACTCTGCCGGTCTCTATGGGAGGGCTGGACCGCGGTGTGCTCTACATCGACACAGAGTCCACTTTCTCTGCAGAAAGACTGGTGGAGATTGCACAGAGCAGGTTCCCCAGATACTTTGGAGATCAGCAGCGCCTCCTGGAGATGGCCAAGAGGGTCCACCTGTTCCGGGAGCTCACCTGCCAGAGCGTGCTAAAGAGGCTGGAGAGCTTGGAGGAGGACATCATCTCCAGGAAGGTGGGCTTGGTGGTGGTGGACTCCATTGCCTCTGTGGTCAGGAAGGAGTTCGACACCAGTCTCCCAGGCAACCTCACAGAGAGAGGCAACCTGCTCACCCAAGAGGCAGCTACACTGAAGTACCTGGCTGAGGCCTTCTGTATCCCAGTAAGCTGCTAA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10869 RAD51L1, RAD51B; RAD51-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000071 True 756 mRNA 0.57 6 2128584 2135898

Neighbor

gene id symbol gene type direction distance location
AMCG00000070 tmem229b,LOC107752730,LOC107708331,LOC102785226 coding upstream 13417 2114661 ~ 2115167 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding upstream 93942 2013547 ~ 2034642 (+)
AMCG00000067 NA coding upstream 267840 1860508 ~ 1860744 (+)
AMCG00000066 NA coding upstream 346813 1740809 ~ 1781771 (+)
AMCG00000057 NA coding upstream 408978 1693152 ~ 1719606 (+)
AMCG00000074 LOC106602716,LOC107752725 coding downstream 436881 2572779 ~ 2607991 (+)
AMCG00000086 slc25a21,LOC107679800 coding downstream 640769 2776667 ~ 2790487 (+)
AMCG00000088 NA coding downstream 704017 2839915 ~ 2841035 (+)
AMCG00000085 nkx2.1,nkx2-1,LOC107679765,LOC107666245,LOC107582966,LOC107578306 coding downstream 722255 2858153 ~ 2860184 (+)
AMCG00000075 NA coding downstream 940287 3076185 ~ 3107875 (+)
G147635 crip1,LOC107600860,LOC103034058,LOC106611282 non-coding upstream 299041 1820357 ~ 1829543 (+)
G147580 NA non-coding upstream 508509 1619172 ~ 1620075 (+)
G147579 NA non-coding upstream 512633 1613310 ~ 1615951 (+)
G147565 NA non-coding upstream 540289 1588077 ~ 1588295 (+)
G147564 NA non-coding upstream 542260 1586057 ~ 1586324 (+)
G147688 NA non-coding downstream 155242 2291140 ~ 2358137 (+)
G147689 LOC107575789 non-coding downstream 165589 2301487 ~ 2368445 (+)
G147687 NA non-coding downstream 214143 2350041 ~ 2354058 (+)
G147735 NA non-coding downstream 342812 2478710 ~ 2478958 (+)
G147739 NA non-coding downstream 389293 2525191 ~ 2525421 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 69814 2036023 ~ 2058770 (+)
G147416 NA other upstream 1011634 1063085 ~ 1116950 (+)
G147311 NA other upstream 1630073 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 1874143 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 2024222 55439 ~ 104362 (+)
G147726 LOC104962440 other downstream 267832 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 1554874 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 1585087 3720985 ~ 3724316 (+)
G148040 NA other downstream 1624281 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 1976222 4112120 ~ 4193033 (+)

Expression


Co-expression Network