Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00000073 |
| gene name | mta1,LOC107679789,LOC107666257,LOC107600838 |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030141.1 |
| NCBI id | CM030141.1 |
| chromosome length | 22147039 |
| location | 2036023 ~ 2058770 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| mta1 | Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Predicted to be involved in several processes, including histone deacetylation; negative regulation of transcription by RNA polymerase II; and response to ionizing radiation. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA1 (metastasis associated 1). |
| description |
|---|
| PREDICTED: metastasis-associated protein MTA1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00000073 | True | 621 | mRNA | 0.58 | 4 | 2036023 | 2058765 |
| TU185815 | False | 238 | lncRNA | 0.66 | 1 | 2058533 | 2058770 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00000072 | mta1,LOC102776995,LOC107741866,LOC107666257 | coding | upstream | 1381 | 2013547 ~ 2034642 (+) |
| AMCG00000067 | NA | coding | upstream | 175279 | 1860508 ~ 1860744 (+) |
| AMCG00000066 | NA | coding | upstream | 254252 | 1740809 ~ 1781771 (+) |
| AMCG00000057 | NA | coding | upstream | 316417 | 1693152 ~ 1719606 (+) |
| AMCG00000056 | NA | coding | upstream | 652969 | 1361377 ~ 1383054 (+) |
| AMCG00000070 | tmem229b,LOC107752730,LOC107708331,LOC102785226 | coding | downstream | 55891 | 2114661 ~ 2115167 (+) |
| AMCG00000071 | NA | coding | downstream | 69814 | 2128584 ~ 2135898 (+) |
| AMCG00000074 | LOC106602716,LOC107752725 | coding | downstream | 514009 | 2572779 ~ 2607991 (+) |
| AMCG00000086 | slc25a21,LOC107679800 | coding | downstream | 717897 | 2776667 ~ 2790487 (+) |
| AMCG00000088 | NA | coding | downstream | 781145 | 2839915 ~ 2841035 (+) |
| G147635 | crip1,LOC107600860,LOC103034058,LOC106611282 | non-coding | upstream | 206480 | 1820357 ~ 1829543 (+) |
| G147580 | NA | non-coding | upstream | 415948 | 1619172 ~ 1620075 (+) |
| G147579 | NA | non-coding | upstream | 420072 | 1613310 ~ 1615951 (+) |
| G147565 | NA | non-coding | upstream | 447728 | 1588077 ~ 1588295 (+) |
| G147564 | NA | non-coding | upstream | 449699 | 1586057 ~ 1586324 (+) |
| G147688 | NA | non-coding | downstream | 232370 | 2291140 ~ 2358137 (+) |
| G147689 | LOC107575789 | non-coding | downstream | 242717 | 2301487 ~ 2368445 (+) |
| G147687 | NA | non-coding | downstream | 291271 | 2350041 ~ 2354058 (+) |
| G147735 | NA | non-coding | downstream | 419940 | 2478710 ~ 2478958 (+) |
| G147739 | NA | non-coding | downstream | 466421 | 2525191 ~ 2525421 (+) |
| G147416 | NA | other | upstream | 919073 | 1063085 ~ 1116950 (+) |
| G147311 | NA | other | upstream | 1537512 | 449652 ~ 498511 (+) |
| AMCG00000032 | NA | other | upstream | 1781582 | 231336 ~ 254441 (+) |
| AMCG00000025 | NA | other | upstream | 1931661 | 55439 ~ 104362 (+) |
| AMCG00000026 | NA | other | upstream | 1998248 | 28694 ~ 37775 (+) |
| G147726 | LOC104962440 | other | downstream | 344960 | 2403730 ~ 2403972 (+) |
| AMCG00000094 | NA | other | downstream | 1632002 | 3690772 ~ 3699093 (+) |
| AMCG00000093 | srp14,LOC106610862 | other | downstream | 1662215 | 3720985 ~ 3724316 (+) |
| G148040 | NA | other | downstream | 1701409 | 3760179 ~ 3760624 (+) |
| AMCG00000113 | NA | other | downstream | 2053350 | 4112120 ~ 4193033 (+) |
