AMCG00000082 (adssl1,pura1)



Basic Information


Item Value
gene id AMCG00000082
gene name adssl1,pura1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3523600 ~ 3536734 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00000082
GTGATCTGAGGTGAAACGCGGCTCTGCGGGGTTATTTCGGACGGGCGGCATCTGCGAGTGCGCTGCTGTAAACATGTCGGGCGGCTGGACAGTCAACGAGCACAAGAACCACACAAACCCACCCGGGTCTGGGGTGAAGCGACCCCGCAGCGACTCGGGCAACAGGGTGACGGTGGTCCTGGGGGCGCAATGGGGAGACGAAGGCAAAGGAAAGGTGGTCGACTTGCTGGCGACAGAGTCCGACATTGTGTGCCGGTGCCAGGGTGGAAACAACGCAGGACACACAGTGGTAGTGGAAGGgaaagaatatgattttcacCTCCTGCCCAGTGGAATTATCAACCCCAAAGCAGTGTCCTTCATTGGAAATGGGGTTGTGATTCATCTGCCAGGCTTGTTTGAAGAGGGtgataaaaatggaaagaaagGGCTGAAGGACTGGGAAAAAAGACTGATAATTTCTGACCGTGCCCATATTGTGTTCGATTTCCATCAGGCTGTGGATGGGCTCCAGGAGGTCCAACGACAGGAGcaagaggggaaaaaTATTGGAACTACTAAAAAGGGCATCGGACCCACGTATTCCAGCAAAGCAGCACGAACTGGCCTGCGTGTGTGTGACCTACTAGCTGATTTCAAGGACTTCTCTGCCAGGTTTAAAAATCTAGCCCAGCAGTACCAATCCATGTTCCCCACCCTGGAAGTAGATGTTGACGGTCAGCTGAAAAAACTTAAGGAATATGCCGAGAGGATACGACCCATGGTGAGAGACGGTGTGTATTTCATGTATGAAGCCATTCATGGCCCCCAGAAGAAAATCCTAGTCGAAGGTGCTAATGCAGCCCTGCTTGACATTGACTTTGGAACGTACCCTTTTGTGACCTCCTCGAACTGCACAGTGGGTGGCGTGTGCACTGGCCTGGGCATCCCCCCGCAGAACATCGGCGAGGTCTATGGAGTAGTGAAGGCCTACACCACCAGAGTGGGCATCGGGGCCTTCCCCACAGAACAAACCAACGAGATTGGAGAGCTGCTGCAGTCCAGAGGCCACGAGGTGGGAGTGACCACAGGCAGGAAGAGGCGTTGTGGCTGGCTGGACCTCGTCATTCTCCGATATGCAAATATGATCAATGGATTCACTGCGTTCGCACTGACAAAGCTGGATATTCTGGATTCGCTGGATGAGATCAAAGTGGGCATCGCCTACAAGCTCAATGGCAAAAGGATTCCCTATTTCCCAGCAAACATGGAGATCCTACAGAAAGTGGAGGTGGATTATGAGACTCTGCCAGGCTGGAAGAGCGACACCACTGCGGCAAGGAAGTGGGACGACCTGCCACCCAAGGCACAGAACTACATCCGATTTGTGGAGAACCATATTGGCATTCCCATAAAATGGGTTGGGGTTGGAAAGTCAAGAGAGTCCATGATCCAGATGTTCTAGACACAGACCTGCCTCCCTTTGGTCAAGACAGATGTGCTCATAATGGCTGTGCTCCTGTCAATTTCCTTTTTAACCCTGCAGATGTTTTGGGGTCATTTTAACCAAATGTTATGCATAACTAGGGGAGTCAACAGAGTTAATTACACTTACACAGCCAAGGGTTTTTGTATCCATCATTTAGACTGATTTTGCTTGTGTATGATTTGgggtgttttttgttaattttcatACCTATTGGGTTAGACTTTATTGTGGTGGAAGGCTTGCTAGAATGAAGAAGCTGGGCAGCAATGTAATGTGAAAAAGCTTTATGTTGAGCATGAAGCTGTTAATGATGAAAAGGCAAACTGGTGaattttttctttgcatttcattaagCTCTCATAGCAAAACATCCTCCACAGTGATTAAGAACACTAAAACACTGAATTGCCTACAATCAACATTCTTTACAGCGTTCCTTCAGATGTGTTAACATAACTAACACAGGTTATCATAGGTGAGCTGAAGTTTATCAAGTTTAGTCCCTTCCAAATTTCCTTGACTTCATCTCGGATACAGTTTGTGTTCTTTCTCAAGTTGTGGACGTTATATGTGTGCTTTTCTCtccagggaaaaataaaaaatctgaagcCCACTGAAACAGCCTCAATGCAGCAGGTGAGGCCAAcaggttttaaatgtaatactgcCATAAGATAGAGTACAGAGGGCAACAGGTAGCCATTTTTACTGTGTTCGCAATCCTTTCCTTCTTCATGTGGTGCTGTATACCTTTTATCAAGAAGTTGGACCCAACAGATAAATGAATAACCcctggtttgttttattgtttttaaggatAAATATCCTCAAAGTTCTTTTGCATAGACTTGAATTAAACCCTGGCCAGTACCTGATGCCATAGCCTAGCTTGCTGCTTATTcagttgcttgtttttttaaatacagaagcaCTATAGAAATGTTCACAAgccattttattgtattattgtaatattgttaaaattggcattttgtattttttatgttttactcatgttttaagtgctgtttttatttccccaaacAGAGTGAAATGTTTGATGTTTGGTTGGCCCTCATTGCCAACAGTTTTAAAGtgcttacatttaaattcaggAGTAAAGAGATCTCTCACACTTctggattaatcattattacaaaACATACGAGTGAGAAAAAGTGTATCCTTTCACTGGAATGACTTCTGAACAACATGTTATGCCTAGCCTAATTGACTCTGATGATTCTGTTGGACAGGCAAGCATCCAAGAAGGGTTACTGCAACTGACTTCAGTGCATGGCTGTGTGTAAgaactgtaaatgtacagtccaaataaaatcaattgcacattgtttactttttttaatggaggGACTTTAGACCTATATGATGGGGTCTGGATCTAGGTCTGTCCAATATCTTAATCTTTCTACTTGCAAgtcaaattaacaaatatattatgttatCCATAATATCTCCTAGCATGTAACATAATTGACATTACAGGATTAGTGTTACAACATTACAGTAAACTAGGAAAATACTTTACAACTCCTGTTAAACATCAAAAGCTGTTTCCTTTGTGGAAAATTGAGTTGGTAATAACTCTTAATACAGTTTCAAGTTCTGACGAAAAGAAccattcttattcttattattcaatcaatattttcttgtatattttaactttttgctTCATCTTGTCATTGCTGATTTTCAAATTGTTCGATATAGTTTGCTAATGCATTTCACAGTCATTAAAAACTGATTGCTACAAAATGAAAGGGAACCTGAAAACATTCAAGTAGAGAATGATATGTGGTTAATGTGGatgtttt

Function


symbol description
adssl1 Enables several functions, including GTPase activity; actin filament binding activity; and adenylosuccinate synthase activity. Involved in several processes, including alpha-amino acid metabolic process; cellular response to electrical stimulus; and purine ribonucleoside monophosphate metabolic process. Predicted to be active in cytoplasm. Biomarker of sarcoma. Orthologous to human ADSS1 (adenylosuccinate synthase 1).

NR:

description
PREDICTED: adenylosuccinate synthetase isozyme 1

GO:

id name namespace
GO:0044208 'de novo' AMP biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0004019 adenylosuccinate synthase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01939 purA, ADSS; adenylosuccinate synthase

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00000082 True 3306 mRNA 0.43 13 3523600 3536734

Neighbor


gene id symbol gene type direction distance location
AMCG00000081 NA coding upstream 53636 3464363 ~ 3469964 (+)
AMCG00000079 NA coding upstream 59294 3443513 ~ 3464306 (+)
AMCG00000078 NA coding upstream 107043 3403359 ~ 3416557 (+)
AMCG00000075 NA coding upstream 415725 3076185 ~ 3107875 (+)
AMCG00000085 nkx2.1,nkx2-1,LOC107679765,LOC107666245,LOC107582966,LOC107578306 coding upstream 663416 2858153 ~ 2860184 (+)
AMCG00000083 NA coding downstream 1954 3538688 ~ 3541156 (+)
AMCG00000090 NA coding downstream 111072 3647806 ~ 3680717 (+)
AMCG00000089 NA coding downstream 177930 3714664 ~ 3720675 (+)
AMCG00000102 pp14b,ppp1r14d,LOC105916596,LOC101077163,LOC105908342 coding downstream 369688 3906422 ~ 3915953 (+)
AMCG00000104 NA coding downstream 391738 3928472 ~ 3940793 (+)
G147856 NA non-coding upstream 227732 3216784 ~ 3295868 (+)
G147842 NA non-coding upstream 384411 3135920 ~ 3139189 (+)
G147814 NA non-coding upstream 487254 3035019 ~ 3036346 (+)
G147809 NA non-coding upstream 497811 3025378 ~ 3025789 (+)
G147808 NA non-coding upstream 500332 3022938 ~ 3023268 (+)
G147994 NA non-coding downstream 93848 3630582 ~ 3631455 (+)
G148010 NA non-coding downstream 151229 3687963 ~ 3688231 (+)
G148036 NA non-coding downstream 191591 3728325 ~ 3759003 (+)
G148075 NA non-coding downstream 339637 3876371 ~ 3879521 (+)
G148119 NA non-coding downstream 474920 4011654 ~ 4013403 (+)
G147726 LOC104962440 other upstream 1119628 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 1464830 2036023 ~ 2058770 (+)
G147416 NA other upstream 2406650 1063085 ~ 1116950 (+)
G147311 NA other upstream 3025089 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 3269159 231336 ~ 254441 (+)
AMCG00000094 NA other downstream 154038 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 184251 3720985 ~ 3724316 (+)
G148040 NA other downstream 223445 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 575386 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 1551705 5088439 ~ 5161195 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011163 adss1 coding NC_007128.7 CM002901.2 1323699 ~ 1355790 (+)