AMCG00000087 (pax9,LOC102777290,LOC107666242,LOC107679748,LOC107741874)


Basic Information

Item Value
gene id AMCG00000087
gene name pax9,LOC102777290,LOC107666242,LOC107679748,LOC107741874
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 2807694 ~ 2819520 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000087
ATGAGTGACGGAAAAAGTTTAATAAGTCCGGCCCATCTTTGTATTAGATTGAAATGTAAGCCAGTCGTCTGTCTCATCAGGAAACAGATCCTGATTTTACCCCTCATGCTACGACCTTTATTTCTCTTCCAGTGGAAACCTCGCTTATCATCCGCGGCTCAGAGAAAGGGAGAACCGGACCCTGATCGTATTCAAAAGTGTAATTTAGAGAACTGTTTCATTATTGGTGGACTAAACGCAATGGAACCTGCCTTTGGGGAGGTGAATCAGTTAGGAGGTGTTTTTGTCAATGGCAGGCCGCTACCCAATGCCATCCGCTTAAGGATTGTAGAGCTGGCACAGCTGGGCATCAGGCCTTGTGACATCAGTAGACAACTCCGCGTTTCCCATGGTTGTGTGAGCAAGATCCTGGCCCGGTACAACGAGACCGGCTCCATCTTACCGGGAGCCATCGGAGGAAGTAAACCGCGGGTCACCACCCCCACCGTGGTCAAGCACATACGGACCTACAAGCAGAGGGACCCTGGCATTTTCGCATGGGAAATTCGGGACCGACTTCTGGCCGACGGGGTGTGCGATAAATTCAATCTGCCTTCTGTCAGCTCAATCAGCCGGATCTTGCGCAACAAGATTGGGAATCTGTCTCAGCAGAATCAATACGAGTCCAGCAAACAGGGCCCCCACCCTCCTCCGCAACCGACCCTCCCCTACAACCACATCTACTCGTACCCGACGCCCATTGCTCCGACCGGGGCCAAAGTGCCGACTCCCCCGGGTGTACCCACCATCCCCGGACACATGGCTATGCACAGGATATGGCCCTCCTCACATTCCGTCACCGATATCCTGGGCATCAGATCCATAACAGAGCAGCAAATTAGTGACACTTCTTCCTATCCCAGTGCCAAAGTAGAAGAGTGGAGCTCACTAAACAGGACTAATTTTCCACCGGCCACCTCGCCTGTAGTCAATGGCATGGATAAAGCCCACTTAGAACAAGAAGCAAAATACACACAGATGCCGAATGGATTGCCCACAGTGAACAGCTATGTCTCGGCCCCCAGCATGGCTCCCTATCATCCGCCCACCCAAGTGTCACCTTACATGGCGTACAGCGCCACCACGTCGGGCTATGTGACCGGCCACACATGGCAGCACCCCAGTGGCAGTGCCCTCTCTCCCCACAGCTGTGACATCCCCGCACCCCTACCCTTCAAAAGCATGCCCAGTGCCAGGGACAGCGGCCACCCAGTCACAGCCTCCGCACTCTAA

Function

symbol description
pax9 Enables sequence-specific DNA binding activity. Acts upstream of or within roof of mouth development. Predicted to be located in nucleus. Is expressed in several structures, including head mesenchyme; neural tube; olfactory region; oral ectoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in tooth agenesis. Orthologous to human PAX9 (paired box 9).

NR:

description
PREDICTED: paired box protein Pax-9-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0060022 hard palate development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09382 PAX1_9; paired box protein 1/9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000087 True 1272 mRNA 0.54 4 2807694 2819520

Neighbor

gene id symbol gene type direction distance location
AMCG00000069 NA coding downstream 453618 2353000 ~ 2354076 (-)
AMCG00000068 LOC107741856,LOC107666262,LOC108425653,LOC107594708,LOC105898002,LOC105026081 coding downstream 903939 1888250 ~ 1903755 (-)
AMCG00000063 NA coding downstream 1071593 1723650 ~ 1736101 (-)
AMCG00000061 ttbk2 coding downstream 1142847 1654325 ~ 1664847 (-)
AMCG00000060 NA coding downstream 1165042 1619082 ~ 1642652 (-)
AMCG00000100 rps6ka5 coding upstream 200897 3020417 ~ 3050033 (-)
AMCG00000095 NA coding upstream 293599 3113119 ~ 3114141 (-)
AMCG00000098 NA coding upstream 316510 3136030 ~ 3177119 (-)
AMCG00000096 NA coding upstream 379359 3198879 ~ 3207812 (-)
AMCG00000099 ppp4r3a,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107726461,LOC107696138 coding upstream 397192 3216712 ~ 3236877 (-)
G147782 slc25a21 non-coding downstream 14365 2790287 ~ 2793329 (-)
G147725 NA non-coding downstream 404076 2403398 ~ 2403618 (-)
G147722 NA non-coding downstream 424480 2383014 ~ 2383214 (-)
G147704 LOC107575789 non-coding downstream 443452 2301198 ~ 2364242 (-)
G147681 NA non-coding downstream 687730 2086358 ~ 2119964 (-)
G147823 NA non-coding upstream 190729 3010249 ~ 3014583 (-)
G147921 NA non-coding upstream 487649 3307169 ~ 3308801 (-)
G147941 NA non-coding upstream 643783 3463303 ~ 3463632 (-)
G147997 NA non-coding upstream 822845 3642365 ~ 3642669 (-)
G148011 NA non-coding upstream 868443 3687963 ~ 3688231 (-)
AMCG00000050 NA other downstream 1866859 890112 ~ 940835 (-)
G147324 NA other downstream 2322111 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 2415212 387118 ~ 392482 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other upstream 732639 3552159 ~ 3558901 (-)
AMCG00000161 NA other upstream 2251947 5071467 ~ 5077246 (-)
G148395 NA other upstream 2519289 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 3184666 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 3226145 6045665 ~ 6067184 (-)

Expression


Co-expression Network