AMCG00000088


Basic Information

Item Value
gene id AMCG00000088
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 2839915 ~ 2841035 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000088
ATGTCTGTTTCTACTAAAATCAGTTTCACAGTGCGGAGTATTTTGGATTTACCGGAGCATGATGCGGAAACGCCACACAACCATTCCCCGGAAAGTTGTTCCAGCTCGTCTTATTCTGAGTGGCTAGACTGTGACAGAAAGACTGACCTCGGCCAGGCACCACTGGTGCGCAGAGTCGTGGTCCCAGTTCTGGTTCGAGACGGAAAGCCATGCCACACCTGCGCTCTGGATCCGGCGCGGTTTCAGGACAAGGCGGGCTGCGCCATCCCCAGCACCGCTGCGCCcgtctccttctctctccatggGTACCAGTCCCTCCAGCATCCGGCGCCTCTGACATTGTTTCCCAGCTATCAGCACTTAACAAACCCAGCAGCATCCAGACACCACTGGGCT

Function

GO:

id name namespace
GO:0021514 ventral spinal cord interneuron differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000088 True 396 mRNA 0.56 2 2839915 2841035

Neighbor

gene id symbol gene type direction distance location
AMCG00000086 slc25a21,LOC107679800 coding upstream 49428 2776667 ~ 2790487 (+)
AMCG00000074 LOC106602716,LOC107752725 coding upstream 231924 2572779 ~ 2607991 (+)
AMCG00000071 NA coding upstream 704017 2128584 ~ 2135898 (+)
AMCG00000070 tmem229b,LOC107752730,LOC107708331,LOC102785226 coding upstream 724748 2114661 ~ 2115167 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding upstream 805273 2013547 ~ 2034642 (+)
AMCG00000085 nkx2.1,nkx2-1,LOC107679765,LOC107666245,LOC107582966,LOC107578306 coding downstream 17118 2858153 ~ 2860184 (+)
AMCG00000075 NA coding downstream 235150 3076185 ~ 3107875 (+)
AMCG00000078 NA coding downstream 562324 3403359 ~ 3416557 (+)
AMCG00000079 NA coding downstream 602478 3443513 ~ 3464306 (+)
AMCG00000081 NA coding downstream 623328 3464363 ~ 3469964 (+)
G147739 NA non-coding upstream 314494 2525191 ~ 2525421 (+)
G147735 NA non-coding upstream 360957 2478710 ~ 2478958 (+)
G147689 LOC107575789 non-coding upstream 471470 2301487 ~ 2368445 (+)
G147688 NA non-coding upstream 481778 2291140 ~ 2358137 (+)
G147806 NA non-coding downstream 169048 3010083 ~ 3016145 (+)
G147807 NA non-coding downstream 179360 3020395 ~ 3021571 (+)
G147808 NA non-coding downstream 181903 3022938 ~ 3023268 (+)
G147809 NA non-coding downstream 184343 3025378 ~ 3025789 (+)
G147814 NA non-coding downstream 193984 3035019 ~ 3036346 (+)
G147726 LOC104962440 other upstream 435943 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 781145 2036023 ~ 2058770 (+)
G147416 NA other upstream 1722965 1063085 ~ 1116950 (+)
G147311 NA other upstream 2341404 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 2585474 231336 ~ 254441 (+)
AMCG00000094 NA other downstream 849737 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 879950 3720985 ~ 3724316 (+)
G148040 NA other downstream 919144 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 1271085 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 2247404 5088439 ~ 5161195 (+)

Expression


Co-expression Network