AMCG00000089


Basic Information

Item Value
gene id AMCG00000089
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3714664 ~ 3720675 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000089
CTTTGTGTCCAACCATCTGTCCCATAAAGATCCGCTGCAATATGCACTATGGTTTTCAGAAAAGCAGCTGGACGAGCGCCCTGACTTCACAGAGCTGGGTCAAAGACCACTgGAAATGGGCCCACACACAAATTCAGGAATGTGTTCGCCATACAGGAATTTACATGATAGTTATGTCTCTAACAGATGGAGCTACAGGCAGCTTATGTCGTTAGCACTGCTGGCCGGCTGTGTCGTTGTGTTGGCGGTGCTGGTCTCCATTCCTGTTTTGGAGAAAAAGTCTGCAAATGAAGAAGCAAGCCATTCTGAAGCAGTTCTGATGAACTTGGATCACTTTGAGAGTGAGGGAAGTGGGTCTGGTGATAGGAGAAGTGAACAGGACAGTAATGTTTGCGATGATGTGAGCAGTTGGCTTCTATCTGAGAGCATCCCACTGGATATGAAGTATGAAGCGAATGCAACCTTTGGAGTCCCCCTGTATGAGGCCTGGACAGACCTTCTCAACACTGCCAGCCAGAGAGTAGATGTGGCTTCTTTCTATTGGTCACTTACTGGAGAGGACATTGGAGTGAACACTTCCACAGATTTACTGGGGAAGCATATCTTCAAACAGTTTCAGGAGCTGCCATCGAGGAATGTGTCAGTGCGTATAGCATCCAGCATCCCGTCCTTGGCATGGAACTCCACTGACCTGCAAATTCTGCGTAAGAAAGgCCTTCAAATAAAGAGAGTCAATTTTGGACATTTAACACATGGTGTCCTTCACACAAAGTTCTGGATTGTAGAcatgaaacatgtttatattgGAAGTGCTAACATGGACTGGAGGTCTCTGACTCAGGTTAAAGAGCTGGGTGTTGTCATCTACAACTGCTCTTGTCTGGCGAAGGACCTCCATAAGATATTCGACTCGTACTGGGTACTTGGGCATCGTAACGCCACTATCCCTGACCCCTGGCCAGACACCTTCAACACCTCAGTCAACAAGGACAACCCCATGCTGGTGAACATCAGTGGAGGTGCTGCTAGCATCTATATTGCTGGTTCTCCACCATCGTTCTGCGCTAGTGGGCGAACAACAGACTTGGACGCCATACTGTCTGCAATCGAGGGGGCGGACAGGTTTATAGACGTGGCGATGATGGAATATTTCCCCACTTCTCGCTACTTGAGGCCATACCAATACTGGCCGCTCATCGACAATGCTCTGAGGAAATCAGCTTTAGAGCGCCACGTTCGGATTCGCCTGTTAATCAGCAGCTGGGAAAGCTCAGACCCAGCCATGCTGCTTTACCTGAAGTCCCTCAGTGCCCTTAATGGCCCCCCCTCCATTATGAGTATTGAAGTGaaACTATTCATTGTTCCAGTGGGGAACCACTCAGACATCCCTTATACCAGACTGaaccacaataaatacatggtgACGGACAAAGTTGCCTACATTGGTACATCCAATTGGTCTGCAGACTACTTCACCAGCACAGCCGGGGTGGGCTTGGTCATCTCCCAGGAACACCAGAAATCAAATCCCAGAAGACAAACTTTTAAGGAGCAGCTGGAGTCCGTGTTTGAGCGAGACTGGAGCTCCACATTTGCTATAAACCTGGCTGATTTTGGGACAGACCCACACACATCGCAGGATACACAATGATTATAAACTTAACCAAAAGATGCAGATACAGTGAAATACAGCTTTAGCATATTAGTTCTGAAATgttatttcagaaaaagtgtTTTAGTGTTCATTTACAAGCCATGTTGGTCCTAAGCTtcacttcagttcagttcaattaCTGAACTTGAACAATTTGTGTGCagtattaagtaaaaaaaaaatgttgacaaGATTGTTGGTATGATAATATGCAAAACTTTCTTATTGTCAATCTGTGATCAGCAGGGTGTAGTTATATTGTAGCAGGTTTCACAGATATAGATTAGCATTAGTCTTTGAGAACCCACTATTATTTCAGGTAGGGTAGTCCAAGACTTGTGCTAATataggtctgtgaaaccatctTTAAATGCCTCAACTCAAgaattatgtttatattatatttcaaaaaattaataatgttaaagtaaatatatctgtacaagtcttcattgtttctgtaatgccatatttccatttccattacCAGCACCAAATTGGCATTAAAATGTGACTGATGCATGTAACATTTTGTGtaactatattaaaaatacagtgtcatttttctgcaattgtaaatttaattaatacacGTATTATCTCTGGCATTGACTTGACCTATTACTTGTATCTATTTGTAATACAtgcaatctgtttatttttattcatgtatatctatctttcaattaaacaattgtcattatttaaagGTATGGTCAAACGTTTTGCTGATATAAATTGTTGTGGAAATTGTTTAAACACTAATAAGATTGATTAAGGTTTTTTGCACgtattcacaa

Function

GO: NA

KEGG:

id description
K16860 PLD3_4; phospholipase D3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000089 True 2454 mRNA 0.42 11 3714664 3720675

Neighbor

gene id symbol gene type direction distance location
AMCG00000090 NA coding upstream 33947 3647806 ~ 3680717 (+)
AMCG00000083 NA coding upstream 173508 3538688 ~ 3541156 (+)
AMCG00000082 adssl1,pura1 coding upstream 177930 3523600 ~ 3536734 (+)
AMCG00000081 NA coding upstream 244700 3464363 ~ 3469964 (+)
AMCG00000079 NA coding upstream 250358 3443513 ~ 3464306 (+)
AMCG00000102 pp14b,ppp1r14d,LOC105916596,LOC101077163,LOC105908342 coding downstream 185747 3906422 ~ 3915953 (+)
AMCG00000104 NA coding downstream 207797 3928472 ~ 3940793 (+)
AMCG00000103 NA coding downstream 236966 3957641 ~ 3976423 (+)
AMCG00000109 myh6,LOC102786665,LOC103031694,LOC108251423,LOC107589804 coding downstream 277503 3998178 ~ 4009288 (+)
AMCG00000108 NA coding downstream 323437 4044112 ~ 4071434 (+)
G148010 NA non-coding upstream 26433 3687963 ~ 3688231 (+)
G147994 NA non-coding upstream 83209 3630582 ~ 3631455 (+)
G147856 NA non-coding upstream 418796 3216784 ~ 3295868 (+)
G147842 NA non-coding upstream 575475 3135920 ~ 3139189 (+)
G147814 NA non-coding upstream 678318 3035019 ~ 3036346 (+)
G148036 NA non-coding downstream 7650 3728325 ~ 3759003 (+)
G148075 NA non-coding downstream 155696 3876371 ~ 3879521 (+)
G148119 NA non-coding downstream 290979 4011654 ~ 4013403 (+)
G148143 NA non-coding downstream 440180 4160855 ~ 4162311 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding downstream 452762 4173437 ~ 4175716 (+)
AMCG00000094 NA other upstream 15571 3690772 ~ 3699093 (+)
G147726 LOC104962440 other upstream 1310692 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 1655894 2036023 ~ 2058770 (+)
G147416 NA other upstream 2597714 1063085 ~ 1116950 (+)
G147311 NA other upstream 3216153 449652 ~ 498511 (+)
AMCG00000093 srp14,LOC106610862 other downstream 310 3720985 ~ 3724316 (+)
G148040 NA other downstream 39504 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 391445 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 1367764 5088439 ~ 5161195 (+)
AMCG00000145 NA other downstream 1586515 5307190 ~ 5314953 (+)

Expression


Co-expression Network