AMCG00000090


Basic Information

Item Value
gene id AMCG00000090
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3647806 ~ 3680717 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000090
TTCAGTCCCGCAGTGTCGACAAGCAGCATGCGGTCATCAACTACGACTTGGCCACAGACGAGCATCTCGTGAAGGACCTGGGCAGCCTCAATGGGACCTTTGTGAATGACTTACGAATTCCAGACCAGACATATATAACGCTCAAACTGGGTGATGTCATACGGTTTGGATATGATCCTCATGTGTATATGCTGGAACGGAGTCAACACAGAGTTCCTGAAGAGGCACTTAAGCATGAGAAGTACACGAGCCAGCTTCAGATGAGCCTGAAAGCATCTGAGGGGAAGAAAGGCCAACATCCTGATGAGAAAGGGGGTGGATCCGAGTCCCCCCGCTCCAAACTGGAGAAAGCAGAGCGCAAGGCACTATCGGAGGCCCCCATGTCCCGGCCCACGCCCCTGTACGGCCAACCCTCGTGGTGGGGGGAGGATGACGCCGGGAACAAAGTGCAGCACACTGAGGGACGGAGGCCCGACGAACCTCATACAGAGAACCCAAAGGAGGGCACTAGACTCGACCCGGAAATGAACGGCACCATCTCCGACTTCCGGGACTCCCAGGGCAAGTCCATTTACTCCTACCGGCGGGAGCCCAGCTACTTCGAGATTCCCACCAAGGAGTTCCAGCAGCACCCCAAGTCGCCCGAGACGGAGGTCCATGAGATCCCCACCAAGGACACCGACGCCCTGCCCCTGccgcccacccccaccccacccgtGGTGCAGAGCCACGCCTCCTTCACCATCGAGTTCGACGAGTGCACGCCAGGGAAGATGAAGATCAAGGACCACGTCACCAAGTTCTCCTTTCGCCAGCGCAAGCCACCCAGCAAGGACCTGGCCTCAACCCCCATCGAGGTGATGTCGGCGGAGAGCAAGGTGGCTGATTGGCTGGTGCACAGCGACCCCAGCATGATGCGGAGGAAGGCCCCCTGTGAGGACGTGTACAGCACCAAGAGTGACCTTCCCATCCATATCAAGACACTGAAAGGCCACCATCATGAGGATGGGACTCAGAGTGACTCGGAGGACCCCATCATGACAGAGATGCAGGGCAAGCAACATCAGGAACCCCCACAGCCTCCACAGCAGTCGCTGCCCCTACAGCAGCTGCAACCACAGCAGCCGCAACCACAACCGCAACCACAACCCCCACAGAAGCCATCCGCCCAGCAGCCGCAACCCCCACAGCAGCCACTGCCTCCTTCCCCGCCCTCAGCAACCAAGGAGCCCACTCGCTCGCCAACAGAGCCGCTCCCCTCCCCCCAGATCCAGCCAAAGCAGGACGCAGAGGTGCTCAACCAGCAGGCCTTCATCATCGAGTTCTTTGACGACAACCCGCGCAAGAAGAGGTCGCAGTCCTTCACGCACAACTCCGCGCACGCTGACTCCTACTCCGCCCTCAAGGCCAAGCTGGAAAAACGCAAGGGCGCCCTGGCGGGGGAGAAAGCCGCCGTGGTGGCGTCAGGGCACATCCCGCCCACGCAGCAGATCACCGTGCCCCTGAAGGGCCAGGGCCCACCGCAGAGGGCCAGCTCGCTGAAACGGGAGAAGACAGAGGACCGCCTGAGCTCGGGATCGTCCCTGTTCTCCTCCCGCACCTCGGTTGCCGTCAAGCCCTTCGGCAGCGTGGGCAGAAAGTCCAAGCTGGCCCAGGAATTCGCAGCCGAGTTCTTGAGGGAGTCAGCACACAGTGTCGCCCCCACCCGGGAAAAGACCTCTCCTCCTCCCACTTCCGCTCCTCCTGTGTTGATATCTCCATCACTCTCTCACCCTCCcgctcctccctctcctcattCAGCTCCTCCTGTTCAGTCCCCCatgcctctctctgcccctctttTGCCCATCACTGTCCGTGCCATGGATCTGAAGCCCAATAAAGCCATGAGGAACGAGGAGGAGGACAGCCTGAGCGACGCAGGGACCTACACCATCGAGACCGAGTCCCAGGACAAAGAGGTAGAGGAGGCGCGCAACATGATTGACCAGGTGCGGCCAGTGGGCCCTGTGGGTCTGGTGGGCCCCAAGTGGGTCTCTCGGTGGGCCAGCCTGGCAGACAGCTACAGTGAAGGGGGACCCATAGCGGGCCTCTATGACCAGCAACCAGGAGAGCTAGCAGATGGAGATGGAAAGATCCTTCACACAGCAATGCTTGCAAGAAGTGTGGAAACCACAGATTCTGAGGGCAGCCAGGCGATGAGAACAAGACGACTCCTTCCTCAAGTGCCACCAGCAGAGAAGGCTGAAAGTCCTACACCCAGTATTCTCATCCGGCATGACCCCTACCCTGGCTATGAGAACCCCGAGAGGGTCTCCAGCGCACCAAGGCAGCAGGAGAACATCCAGAGGCTGTGTGTGCAGGACGACTTGGACCCTGACAGTCTGAGTGATGCTAGCAGGTCAGATGATGGTTCTCTGGTAGAGAGGAGTAGAAAGCACAGAACAGGAAGGACTGCTGACAAAGCCAAACCGGAGAAACTATTTGGTGATAAAAGTGGTACTCCGCACCGATTGGAAGATAAGACAGCTCCTTCAACAAGATCTACATCCTTCTATATTGGGTCAGAAGAGAGACATTCCAAACCCGATGTTGGACACAGTCCTGTCTCATCTCATGCCGAGAGAGATCCGGACATCTCCTCCAAGCCCTTCGCAACAACAGTTTTGATAAAGCCCTTGAACAGCCATGACACACGAAAACCAGTCAAATCCACCACCCATAAAAGTCACACCCAGGAGAAAGAGGCCCTTCCTGCAAAGGAGCTCTCAATTTCATTTGTCAGACAGGAAAGCTTCACCAAAGACCGGCCAAGCGATGACGTCCCAATCAACAAGCTTCCTCACATATCCAGCCACCCGGCTCTGAAGGACCTAGATGCAGGGGATGCTTTCAGAGCAGACTGTAGCCAGGACACGCAAGCAATCCTTAAGGAGACGGAAAATGCCCTGGCTGCTTTAGAGGCCAAGTTCCAGGCTCAGGAGCACGTGAGAGGCCAGAAGCATGAGGCGTCTTCTCGCATGGAAGACTCCTTGTCCGGTGAGTCGGATGTGGACACAGCCAGCACAGTAAGCTTGGTAAGCAACAAAAATGCCCCTACCACAGCACCCAAGAAGCGGTTGGTCATCAGCAGCCTCCAGAAAGAGAAATCGTCCTCCAGCCCTTCTATCCAAGACCAGGGAAGGCAGCCCACGGCACGGGAGAGACTTTCGGAGAAGCGCCGGACCCACTTGACGGACAACTCCAGCAAGGCAGAGCTGACCAAACGGTTCCAATTGCGACGAAGTACAGGGAATCGGGGATCCCTGGACTTCACAGAAGACCTTCAGAGTCACAGCCTGCCCTACTGGCCTGATACAGTCTCTTCGGACCACGAGTCCAGTTCCCGGCCAACCACGCGCAAAAAGCTCACCACCCAGCTGCAGAAGGAAGACTCCAGTAAATCCAGTAAGGGGATGGTCTTCCAGGCTCTCACCCGTTCAAACAGCCTGTCTGCCCCGCGGCCAACCAGGGCCTCTATGCTACGGCGGGCCCGGCTGGGAGAGGCTTCAGATAACGAGGGTACCGAGACGGACAAGGGCTCAGATGTTAACGCGCCAACCAAATCTCAGGCGGACAGCAAAAAGCTCTCCCGCCTCGACATTCTGGCCATGCCTCGCAAGAGAACAGGATCCTTCACTGCGCCCAGCGACACAGAGTCTTCAGCGCCCAGGTCGGGGTTCTCCAACCGCAGCATTGAGGCCAGCACCACTGTCCGCAAGGCATCCGTCCCAGACCCCAAGCCCGGGGCCAGGAGGGCTACTGCAACCACCGCAaagcagccaatcagcaggGCACGCTCCAGCAGCGCCAAATACTCCAGTATGTCCAGCTCCAGGCGGCGACAGAAGGGCTCAGATTACACTTCCACGTCAGACGAGGAGTACGACTCCAACCACAGCTCCCCTAAACACAAACGCTCCCATGCTTCAACAGCCACTCAGACTCCCAGGGCCCAGGCCGCCGCCTCGGGGAGACAGAAGCACAGTTCCAGAGAaactgaggaagaggaggaggacaacGATGCAGACCCCTATCAGCACTGGTCTACACACAGCGCCGAGATTGCAAGGCTAAGTCAGGACCTGGCCAAAGATCTGGCAATCTTGGCCAGGGAAATCCACGACGTGGCTGGGGACGCTGACTCTCAGAGCTCCTCGGGAACTGGGCCCAGCACCTCCCTCAGCTCCGTACCCAACACCCCCGCCTCCACCATCTCGGCCAGAGAGGAGTTGGTCCAACACATTCCAGAGGCCAGTTTGAACTTCCAGAAAGTTCCACCTGGTTCAGCTGGTGTGAAGAAAGAACTTGACCAGAACATGAACGACCAAGACCTCAACTCCAAGCGCCGAATATGGAACAGAGAAGAGgtaatTTTGGACAATCTGATGCTCAATCCTGTTTCTCAGCTCTCTCAAGCCATCCGGGAGAACACAGAGCAGCTGGCGGAAAAAATGAAGATTCTGTTCCATAACAAGGCTGGAAGCTGGGAGGAAATTGAAGCGAAAATCAACTCTGAAAATGAAGTCCCGATCCTCAAAACATCTAACAAGGAAATCTCCTCTATTCTGAAGGAACTAAGACGAGTTCAGAAACAATTGGAAGAGCTAGGGGGCAGACCCATCCCCGGCACAGCCCCTGTGGCAGCTGCGAAAGGCAGAACTGCAGCCAAGGAATTGAGACTCCCAGCCCCGCTTCACAGCACCGGCCAGCAGGGAGGGGGCAGCAACGCCAACGAACGGGCAAAGAAAGCGGGCACTGAGGAGGAGAGCTGTGTGGTCTAA

Function

GO: NA

KEGG:

id description
K16463 CEP170; centrosomal protein CEP170

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000090 True 4823 mRNA 0.57 16 3647806 3680717

Neighbor

gene id symbol gene type direction distance location
AMCG00000083 NA coding upstream 106650 3538688 ~ 3541156 (+)
AMCG00000082 adssl1,pura1 coding upstream 111072 3523600 ~ 3536734 (+)
AMCG00000081 NA coding upstream 177842 3464363 ~ 3469964 (+)
AMCG00000079 NA coding upstream 183500 3443513 ~ 3464306 (+)
AMCG00000078 NA coding upstream 231249 3403359 ~ 3416557 (+)
AMCG00000089 NA coding downstream 33947 3714664 ~ 3720675 (+)
AMCG00000102 pp14b,ppp1r14d,LOC105916596,LOC101077163,LOC105908342 coding downstream 225705 3906422 ~ 3915953 (+)
AMCG00000104 NA coding downstream 247755 3928472 ~ 3940793 (+)
AMCG00000103 NA coding downstream 276924 3957641 ~ 3976423 (+)
AMCG00000109 myh6,LOC102786665,LOC103031694,LOC108251423,LOC107589804 coding downstream 317461 3998178 ~ 4009288 (+)
G147994 NA non-coding upstream 16351 3630582 ~ 3631455 (+)
G147856 NA non-coding upstream 351938 3216784 ~ 3295868 (+)
G147842 NA non-coding upstream 508617 3135920 ~ 3139189 (+)
G147814 NA non-coding upstream 611460 3035019 ~ 3036346 (+)
G147809 NA non-coding upstream 622017 3025378 ~ 3025789 (+)
G148010 NA non-coding downstream 7246 3687963 ~ 3688231 (+)
G148036 NA non-coding downstream 47608 3728325 ~ 3759003 (+)
G148075 NA non-coding downstream 195654 3876371 ~ 3879521 (+)
G148119 NA non-coding downstream 330937 4011654 ~ 4013403 (+)
G148143 NA non-coding downstream 480138 4160855 ~ 4162311 (+)
G147726 LOC104962440 other upstream 1243834 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 1589036 2036023 ~ 2058770 (+)
G147416 NA other upstream 2530856 1063085 ~ 1116950 (+)
G147311 NA other upstream 3149295 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 3393365 231336 ~ 254441 (+)
AMCG00000094 NA other downstream 10055 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 40268 3720985 ~ 3724316 (+)
G148040 NA other downstream 79462 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 431403 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 1407722 5088439 ~ 5161195 (+)

Expression


Co-expression Network