AMCG00000093 (srp14,LOC106610862)


Basic Information

Item Value
gene id AMCG00000093
gene name srp14,LOC106610862
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3720985 ~ 3724316 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000093
GATGGAAGAACCAAACCTGTACCCAGGAAAGGCAATCCAGAGACATTTGACCCTGTTGACAACAAGTGTCTCCTCAGAGCCACAGATGGGAAGAAGAAAATTAGTACAGTGGTAAGCACCAAAGAAGTAATAAAGTTTCAGATGATGTAG
>TU186257
CAGAAGTTAAATTGTACTTCCTGCttgctgtgcgtgtgtgtggtggCTTTAAGCTGAGATCATCTTTAGTTTGAAATTGAGGAGATATACAGTGTCAGCTAAAGGCCATGGTGCTACTTGAAAACGACTCGTTTTTGACAGAACTGACACGGCTGTTTCAAAAGTGTAGGACCAGTGGCAGCGTTtacatcacattaaaaaaatATGATGGAAGAACCAAACCTGTACCCAGGAAAGGCAATCCAGAGACATTTGACCCTGTTGACAACAAGTGTCTCCTCAGAGCCACAGATGGGAAGAAGAAAATTAGTACAGTGGTAAGCACCAAAGAAGTAATAAAGTTTCAGATGGCTTACTCGAACCTGTTGAGGGCACACATGGATGGGctgaagaagaaagacaaaaagagcAAAAGCAAGAAGACCAAAGCCACCCAATGAGGAGACCAACCAGCCCACTCTCTGTGCCAAGTGTTTCAGCCCCCTCCATCAAGAGTTCATCCAGCCACCCCCCCTCAGCCTCATGTCCCGGTATCCCGCACATATCTCTCTTAAAAGCCAGAACTCTGAACGTAGGTAACGCACAAAAGAGGCTGTCAAATTGAGCAGGTTTTCTCCTCGTCACAGggttattttagtttagtttgaaTTCAGATAAcgcaaaataaaaccagtatgAAAGTGTTTCAGAGAATAACGTCTTTGCTGTCCAGGAGGATATAGAAGGGAGCCGAGAGGTGTATCTCATCACGACACCACAAGAACATTGCTGAGCATCGACGCTACTTAAATTCGTGAGGAGAACAATAGCATCGATGTTCCACTTCCTGGTTACCGACTGGTCCTATAGTGGAGTTGTATTTTAGTAAATGAAAGCAAGATTAATAAGAGGCATTTCTCATGATATGCTTGAAACAGAAGGGGCATGCTGGGAAGTGTTTAGAAGGCTGAGTGCAGCAGACAATCTCCCCTGTTTTAAGATGTATGGGTGCCTTGTTTAACTTATCACTTCTCTAAAATGCtattaaactgaaatgcatCTTTGACATGTCTTTAGTAGTTTCTATAAACTTTGAAACATGCCTTGCATCACCCCTTAAATGCCCTTATTAACTAGGAAATACTTGGGACTTAGATTTCATTCCTTGAATTTAAGTAATTTTGAAGTGGAGTTTACTAGTAGAATATTACtggaatgattgttttttacttttatttgtatttaaagattCCAATGTCTGCCAATACTACCCATAATTGTACTAACCGTTGAAACTGGTTATGGTGTTATTTCGTAAAAACGGTAATAACTGAAGAAAAGTTGTGTTATTTGGAAATGATGGGCCActgtgtgtaaaaacaaatccaagCCAAAAAAGCTAAAGTTTATCCCCTActtgttttccttctctcttggttgtacttttttttttttttaatataacaataaatcTTTGAGTTATAACTCATTTTGT

Function

symbol description
srp14 Predicted to enable 7S RNA binding activity and endoplasmic reticulum signal peptide binding activity. Predicted to be involved in protein targeting to ER. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP14 (signal recognition particle 14).

NR:

description
PREDICTED: signal recognition particle 14 kDa protein

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0005786 signal recognition particle, endoplasmic reticulum targeting cellular_component
GO:0030942 endoplasmic reticulum signal peptide binding molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000093 False 150 mRNA 0.43 3 3722029 3722630
TU186257 True 1474 TUCP 0.40 5 3720985 3724316

Neighbor

gene id symbol gene type direction distance location
AMCG00000089 NA coding upstream 310 3714664 ~ 3720675 (+)
AMCG00000090 NA coding upstream 40268 3647806 ~ 3680717 (+)
AMCG00000083 NA coding upstream 179829 3538688 ~ 3541156 (+)
AMCG00000082 adssl1,pura1 coding upstream 184251 3523600 ~ 3536734 (+)
AMCG00000081 NA coding upstream 251021 3464363 ~ 3469964 (+)
AMCG00000102 pp14b,ppp1r14d,LOC105916596,LOC101077163,LOC105908342 coding downstream 182106 3906422 ~ 3915953 (+)
AMCG00000104 NA coding downstream 204156 3928472 ~ 3940793 (+)
AMCG00000103 NA coding downstream 233325 3957641 ~ 3976423 (+)
AMCG00000109 myh6,LOC102786665,LOC103031694,LOC108251423,LOC107589804 coding downstream 273862 3998178 ~ 4009288 (+)
AMCG00000108 NA coding downstream 319796 4044112 ~ 4071434 (+)
G148010 NA non-coding upstream 32754 3687963 ~ 3688231 (+)
G147994 NA non-coding upstream 89530 3630582 ~ 3631455 (+)
G147856 NA non-coding upstream 425117 3216784 ~ 3295868 (+)
G147842 NA non-coding upstream 581796 3135920 ~ 3139189 (+)
G147814 NA non-coding upstream 684639 3035019 ~ 3036346 (+)
G148036 NA non-coding downstream 4009 3728325 ~ 3759003 (+)
G148075 NA non-coding downstream 152055 3876371 ~ 3879521 (+)
G148119 NA non-coding downstream 287338 4011654 ~ 4013403 (+)
G148143 NA non-coding downstream 436539 4160855 ~ 4162311 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding downstream 449121 4173437 ~ 4175716 (+)
AMCG00000094 NA other upstream 21892 3690772 ~ 3699093 (+)
G147726 LOC104962440 other upstream 1317013 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 1662215 2036023 ~ 2058770 (+)
G147416 NA other upstream 2604035 1063085 ~ 1116950 (+)
G147311 NA other upstream 3222474 449652 ~ 498511 (+)
G148040 NA other downstream 35863 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 387804 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 1364123 5088439 ~ 5161195 (+)
AMCG00000145 NA other downstream 1582874 5307190 ~ 5314953 (+)
AMCG00000146 NA other downstream 1610197 5334513 ~ 5340550 (+)

Expression


Co-expression Network