AMCG00000100 (rps6ka5)


Basic Information

Item Value
gene id AMCG00000100
gene name rps6ka5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3020417 ~ 3050033 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000100
ATGGAAAATGAGTTGCTGCTTTATCTATACAAAGCTAACCTGACGGGCCATGCTGAGAAAGTAGGCATTGAGAACTTTGAATTGCTCAAGGTGCTTGGGACCGGAGCCTATGGGAAGGTGTTCCTGGTCAGAAAGGTCAGTGGGCATGATGCAGGGAAGCTGTATGCCATGAAAGTGCTGAAGAAGGCCACCATTATCCAAAAAGCCAAGACGGCGGAACACACGAGGACAGAGAGACAAGTGCTGGAGCATATCCGCCAGTCCCCCTTCCTGGTCACCTTACACTACGCCTTCCAGACAGACACCAAACTGCACCTCATCCTGGACTATGTGAACGGGGGGGAGCTCTTCACACACCTGTCCCAGAGAGAGCGTTTCAAGGAGAACGAGGTGGGCCTCTACAGTGGGGAGATCGTGCTAGCACTGGAGCACCTCCATAAGCTGGGTATTATATATCGAGATATCAAGCTGGAGAATATTCTTCTGGACTCCAATGGTCACATAGTTCTTACAGACTTTGGTCTCAGCAAAGAATTTCTAGTTGATGAGAATGAAAGGGCATATTCCTTCTGCGGCACCATCGAGTATATGGCTCCAGAGATTGTCAGGGGGGGAGACACCGGCCACGACAAGGCAGTGGACTGGTGGAGTCTGGGAGTCCTTATGTATGAGCTGATGACTGGGGCGTCTCCTTTCACCGTGGATGGAGAGCGAAACTCACAGACAGAAATATCCAAGAGGATATTGAAGAGCGAGCCTCCATTCCCTCCGGAAATAGGACCCTTAGCTAAAGACCTGATGCAGCGCCTCCTGATCAAAGACCCCAAGAAGAGGCTGGGCTCAGGCCCCACTGGAGCAGAAGAGGTGAAGAAACATCCCTTCTACCAGAAAATTAACTGGGATGATTTGGCAGCTAAGAAAGTCTCGGCTCCTTTTAAGCCGGTAATCCGAGATGAACTGGATGTAAGTAACTTTGCTGAAGAGTTTACTGAAATGGACCCCACCTACTCACCAGCAGCGCTGCCCCAGAACTCTGACCGCATCTTTCAGGGCTATTCCTTCATCGCTCCCTCCATTTTGTTCAAGCGCAATGCTGTGATCAGCGACCCCTTCCAGCTGCACGGGGGGGTGGAGCGGCCCGGGGCAACGGCCGTGGCTCGCAGCGCCATGATGAAGGACTCTGTATTTTATATGCACTATGAGTTAGATTTGAAAGAGAGCCCACTAGGAGAAGGAAGCTTTTCAATCTGCAGAAGGTGCACCCATAAGAAGACAGGCCAAGAATATGCAGTGAAAATCATCAGCAAGAGAATGGAATCGCAAACTCAGAAGGAAATAGCAGCCTTAAAACTGTGTGATGAGCACCCAAACATTGTGAAGATTTATGAAATTTATCATGATCAGCTGCACACATTCATGGTGCTGGAGTTACTGAAAGGTGGGGAGCTGCTGGAACGCATCCGCAAGAAGAAGCACTTCAGCGAGACGGAGGCCAGCCGGATCATGAGGAAGCTGGTGTCGGCGGTCAGCCACATGCACGACGTCGGTGTGGTCCACCGCGACCTGAAGCCCGAGaatttgtTGTTCACGGATGAAAGCGACAGCTCTGAAATAAAGATCATAGACTTTGGATTTGCTCGATTAAAACCGCCAGATAACCAGCCATTAAAAACCCCATGCTTCACCCTGCATTATGCCGCCCCAGAGATCCTGAAATACGATGGCTACGACGAGTCCTGCGACCTCTGGAGTTTAGGGGTCATCCTGTACACAATGCTGTCAGGACAAGTGCCCTTCCAGTGTCAGGAGAAGACTCTCACTCACACCAGTGCTGAAGAGATCATGAAGAAGATCAAGCAAGGGGATTTCTCTTTTGAAGGAGAGGCATGGAAGAATGTCTCCCAACAAGCCAAGGATTTGATACAAGAACTGCTTACTGTCGACCCAAATAAACGAATAAAAATGTCAAGCCTGCGGTATAACGAATGGCTTCAGGATGACAGCCAGCTCTCCTCCAATCCGCTAATGACTCCCGACATCCTGGGGTCCTCTGCTGCTTCCGTGCACACTTATGTCAAGGCCACGTTTCATgCTTTTAACAAGTGCAAGCGGGAGGGTTTCTGCTTGCAGAACGTGGACAAGGCGCCCTTGGCTAAGAGGAGGAAGATGAAAAAGACCAGCACcagcacagagacacgcagCAGCTCCAGCGAGAGCTCCCACTCATCCTCGTCCTCGTCGCAGTCGCAGGGCAAGACCTCCCCGAGCAAGGCCTCGCAGCCTAGCCAGCCTGGAGACAGCAATAACCACAACGACGCCGTCTTCCACTTCTCAGAGtgagcaaaaagaaaacacgcacacgcacagcaGGAAACCACGTCTCCTCACAGTTAATTAGCAATAGTTGGAAAGGATGGTCCTGAGTTGTTTATGATGAAGACCGTGAGTATTAAGGGCTCTCGCCGACCGCTACTTCACTTCCTCTGCCATTCAGTAGGCCACGGTCAGTGTCGTGCACTTGGAGAGAAACCCAAGAAACTCGATAATTTCAAACCCCGCACTGTCCAGACTTCGCCGAGGTCGATTTTCACAAAGGTTTCCGAAGCTATCCGAAATTGTACCGTACCATTTCATAGCCGGTATCGTGAGTGGCTGTGATATCCAAGTGGTGTGAAATGTCCTTCCATTTCAACTCTGTAGCTGGAAGTGAAGCCTATTGAAAcatctacacacacatgca

Function

symbol description
rps6ka5 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in histone phosphorylation; peptidyl-serine phosphorylation; and regulation of transcription, DNA-templated. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human RPS6KA5 (ribosomal protein S6 kinase A5).

NR:

description
PREDICTED: ribosomal protein S6 kinase alpha-5

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04445 RPS6KA5, MSK1; ribosomal protein S6 kinase alpha-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000100 True 2740 mRNA 0.50 17 3020417 3050033

Neighbor

gene id symbol gene type direction distance location
AMCG00000087 pax9,LOC102777290,LOC107666242,LOC107679748,LOC107741874 coding downstream 200897 2807694 ~ 2819520 (-)
AMCG00000069 NA coding downstream 666341 2353000 ~ 2354076 (-)
AMCG00000068 LOC107741856,LOC107666262,LOC108425653,LOC107594708,LOC105898002,LOC105026081 coding downstream 1116662 1888250 ~ 1903755 (-)
AMCG00000063 NA coding downstream 1284316 1723650 ~ 1736101 (-)
AMCG00000061 ttbk2 coding downstream 1355570 1654325 ~ 1664847 (-)
AMCG00000095 NA coding upstream 63086 3113119 ~ 3114141 (-)
AMCG00000098 NA coding upstream 85997 3136030 ~ 3177119 (-)
AMCG00000096 NA coding upstream 148846 3198879 ~ 3207812 (-)
AMCG00000099 ppp4r3a,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107726461,LOC107696138 coding upstream 166679 3216712 ~ 3236877 (-)
AMCG00000101 NA coding upstream 188814 3238847 ~ 3255589 (-)
G147823 NA non-coding downstream 5834 3010249 ~ 3014583 (-)
G147782 slc25a21 non-coding downstream 227088 2790287 ~ 2793329 (-)
G147725 NA non-coding downstream 616799 2403398 ~ 2403618 (-)
G147722 NA non-coding downstream 637203 2383014 ~ 2383214 (-)
G147704 LOC107575789 non-coding downstream 656175 2301198 ~ 2364242 (-)
G147921 NA non-coding upstream 257136 3307169 ~ 3308801 (-)
G147941 NA non-coding upstream 413270 3463303 ~ 3463632 (-)
G147997 NA non-coding upstream 592332 3642365 ~ 3642669 (-)
G148011 NA non-coding upstream 637930 3687963 ~ 3688231 (-)
G148041 NA non-coding upstream 710269 3760302 ~ 3760617 (-)
AMCG00000050 NA other downstream 2079582 890112 ~ 940835 (-)
G147324 NA other downstream 2534834 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 2627935 387118 ~ 392482 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other upstream 502126 3552159 ~ 3558901 (-)
AMCG00000161 NA other upstream 2021434 5071467 ~ 5077246 (-)
G148395 NA other upstream 2288776 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 2954153 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 2995632 6045665 ~ 6067184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012275 rps6ka5 coding NC_007128.7 CM002901.2 38393189 ~ 38442362 (-)
grasscarp (Ctenopharyngodon idella) CI01000062_00681984_00709499 RPS6KA5 coding CI01000062 null 679804 ~ 709755 (+)