AMCG00000113


Basic Information

Item Value
gene id AMCG00000113
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4112120 ~ 4193033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000113
TTTTCAAATTCCACAAGGCTCTATAAATACGGTATGGAAACCTGATTTGAATTTAAACCTATCTAGCTTCAGCACAAGTTTGAATTTTCTATCAGAACCTATCGAAGAGAGCTCAGAATGAGTGCAGGCAACAGATTCCTCCGACAGGCGATGCAGCCCATCAGGCTGGTGGAGATTGTAAAGGAAAGGGCAAAGGAAAAGGAGAGCATGGTCACGGTCATGGTCACGGTCATGGTCACGGAGAACACGGAGGTCATGGAGATCACGGATGTGGAAAACCTGGAGGAAAAGGAGGGGATTGCGCTAAAAAGGGAGGCCAAGGTGGTGGCCAAGGTGGTGGCCACTGACACATGACCCAGATGTGAAACCACTTCATCACCTCCCAACGTGGGCTTTGTAGCTATATATTCAGCTGGAAGATGTGCAAATATTACTGTCAAAAGTTTGTAAAAAGTGGT
>TU186372
TTTACAGTTTGCAGTTATAAAGTGTAAACTGTAAACgtagagagagagcagtgtttttgtttgaattaggtctggatgtttttttttttttctatgtccTTCCTGCCTTGTTATCTACCACACCTACTATCCACGTAGTCTAAAATGCCTTCTACCTTCCCTGCCCTTTTTTGAACAAGGTGAGGTTTTTCAAATTCCACAAGGCTCTATAAATACGGTATGGAAACCTGATTTGAATTTAAACCTATCTAGCTTCAGCACAAGTTTGAATTTTCTATCAGAACCTATCGAAGAGAGCTCAGAATGAGTGCAGACAAGCCAACGATTCCTCCGACAGGCGATGCAGCCCATCAGGCTGGTGGAGATTGTAAAGGAAAGGGCAAAGGAAAAGGAGAGCATGGTCACGGTCATGGTCACGGTCATGGTCACGGAGAACACGGAGGTCATGGAGATCACGGATGTGGAAAACCTGGAGGAAAAGGAGGGGATTGCGCTAAAAAGGGAGGCCAAGGTGGTGGCCAAGGTGGTGGCCACTGACACATGACCCAGATGTGAAACCACTTCATCACCTCCCAACGTGGGCTTTGTAGCTATATATTCAGCTGGAAGATGTGCAAATATTACTGTCAAAAGTTTGTAAAAAGTGGTACAATGTTTTacttataatgataataataaaaggtcAATGTTCTCCTTGTGTCGGTTGCTGTTGGGAAATAGTTCAGTAAAAACTGTCCACTCCATCTTTTCAGAGCAAAAATAATACTGCTGAGCTGAGGCGA
>TU186373
ATACAGGAATGGACAAGATTGAACAAGGTGGGGTCACCAAAGCACAAGTTTGAATTTTCTATCAGAACCTATCGAAGAGAGCTCAGAATGAGTGCAGACAAGCCAACGATTCCTCCGACAGGCGATGCAGCCCATCAGGCTGGTGGAGATTGTAAAGGAAAGGGCAAAGGAAAAGGAGAGCATGGTCACGGTCATGGTCACGGTCATGGTCACGGAGAACACGGAGGTCATGGAGATCACGGATGTGGAAAACCTGGAGGAAAAGGAGGGGATTGCGCTAAAAAGGGAGGCCAAGGTGGTGGCCAAGGTGGTGGCCACTGACACATGACCCAGATGTGAAACCACTTCATCACCTCCCAACGTGGGCTTTGTAGCTATATATTCAGCTGGAAGATGTGCAAATATTACTGTCAAAAGTTTTTAAAAAGCGGGA
>TU186374
TTTACAGTTTGCAGTTATAAAGTGTAAACTGTAAACgtagagagagagcagtgtttttgtttgaattaggtctggatgtttttttttttttctatgtccTTCCTGCCTTGTTATCTACCACACCTACTATCCACGTAGTCTAAAATGCCTTCTACCTTCCCTGCCCTTTTTTGAACAAGTTTGAATTTTCTATCAGAACCTATCGAAGAGAGCTCAGAATGAGTGCAGACAAGCCAACGATTCCTCCGACAGGCGATGCAGCCCATCAGGCTGGTGGAGATTGTAAAGGAAAGGGCAAAGGAAAAGGAGAGCATGGTCACGGTCATGGTCACGGTCATGGTCACGGAGAACACGGAGGTCATGGAGATCACGGATGTGGAAAACCTGGAGGAAAAGGAGGGGATTGCGCTAAAAAGGGAGGCCAAGGTGGTGGCCAAGGTGGTGGCCACTGACACATGACCCAGATGTGAAACCACTTCATCACCTCCCAACGTGGGCTTTGTAGCTATATATTCAGCTGGAAGATGTGCAAATATTACTGTCAAAAGTTTTTAAAAAGCGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000113 False 458 mRNA 0.47 5 4116939 4119980
TU186372 True 782 lncRNA 0.43 6 4116753 4120114
TU186373 False 433 lncRNA 0.49 7 4112120 4193033
TU186374 False 564 lncRNA 0.45 7 4116753 4193033

Neighbor

gene id symbol gene type direction distance location
AMCG00000108 NA coding upstream 40686 4044112 ~ 4071434 (+)
AMCG00000109 myh6,LOC102786665,LOC103031694,LOC108251423,LOC107589804 coding upstream 102832 3998178 ~ 4009288 (+)
AMCG00000103 NA coding upstream 135697 3957641 ~ 3976423 (+)
AMCG00000104 NA coding upstream 171327 3928472 ~ 3940793 (+)
AMCG00000102 pp14b,ppp1r14d,LOC105916596,LOC101077163,LOC105908342 coding upstream 196167 3906422 ~ 3915953 (+)
AMCG00000111 NA coding downstream 50615 4243648 ~ 4280265 (+)
AMCG00000110 NA coding downstream 131476 4324509 ~ 4354247 (+)
AMCG00000121 NA coding downstream 492556 4685589 ~ 4705926 (+)
AMCG00000120 NA coding downstream 563951 4756984 ~ 4760814 (+)
AMCG00000128 LOC107698615,LOC107568572 coding downstream 603336 4796369 ~ 4803426 (+)
G148119 NA non-coding upstream 98717 4011654 ~ 4013403 (+)
G148075 NA non-coding upstream 232599 3876371 ~ 3879521 (+)
G148036 NA non-coding upstream 353117 3728325 ~ 3759003 (+)
G148010 NA non-coding upstream 423889 3687963 ~ 3688231 (+)
G147994 NA non-coding upstream 480665 3630582 ~ 3631455 (+)
G148200 NA non-coding downstream 389278 4582311 ~ 4582551 (+)
G148396 NA non-coding downstream 1160918 5353951 ~ 5354185 (+)
G148402 NA non-coding downstream 1189535 5382568 ~ 5388814 (+)
G148452 NA non-coding downstream 1347646 5540679 ~ 5544478 (+)
G148459 NA non-coding downstream 1484950 5677983 ~ 5678620 (+)
G148040 NA other upstream 351496 3760179 ~ 3760624 (+)
AMCG00000093 srp14,LOC106610862 other upstream 387804 3720985 ~ 3724316 (+)
AMCG00000094 NA other upstream 413027 3690772 ~ 3699093 (+)
G147726 LOC104962440 other upstream 1708148 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 2053350 2036023 ~ 2058770 (+)
AMCG00000136 btbd7 other downstream 895406 5088439 ~ 5161195 (+)
AMCG00000145 NA other downstream 1114157 5307190 ~ 5314953 (+)
AMCG00000146 NA other downstream 1141480 5334513 ~ 5340550 (+)
AMCG00000142 NA other downstream 1242125 5435158 ~ 5454206 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 1687990 5881023 ~ 5888027 (+)

Expression


Co-expression Network