AMCG00000127


Basic Information

Item Value
gene id AMCG00000127
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4837585 ~ 4843986 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000127
GTTTCTGATTGGTCCACAGGGCACGTGGGTGCCACTGTCATGGCGGCGCCCTCGTGTAATGTGCAAAGTGTTGCTTCTGCTCATGTGCATCTGAACTTACATTAAAGACGGCAAAGCGATCTGCGAGGTGATCAGCCGGGTTTGGGTCTCACTGTAGCAGCGTCGACAGCTGTGCCGGCGTTTACAAAaaaaatGAAGTTTAAAAGGTCAAATAAAAAAGTCTTCAGGACTCCCTTTAAGCCCAAACGGGGGATCCATGTAAAGGGAAATTGGACACCAGTTGAGCTTGATCCCAGTCTCTTCTCAGAAGAGGACATGGGAGGGATCGTATGCTTTGAGGAACTTACAGACTACAAACTCGTTGATTCTACATTGCCAGAGGAGAACAAGAAAGCTACTTGTGCTGTGGACAAGAAAGCTAAGAAACGAAAAGCTGGGGCAGAAGCTGACTGGGAGGAGAAGAAAGACCAGGAACAAACAGATGAGCCATCAACACCACCTgccaagaagaaaaagaaaaagaagaagaagaatcaaATCCAGCAGATTGAGTCTGCAGAAGATACTGGTATTGGAAGTGAGGTGGGTGAGGAAGAAGGTGAGATCCTACAGGAGGAGCCACAGGAGGTTGGAGTGTGTCTTGAGGAGGAGAGCACTCAGGAACCCAAGATACCCCTGAaggagcagaagaagaaaaaaaagaagcagaagaaaaacacaacacaggcccAGGAAGCAGATCCTCCAAAAACCAAAAAGAAGTCCAGAAATTGGACAAGTTCTGTATCTTCGAGCCAGGAGGCCGACGTGTCTGCGTGGAAGGATCTGTTTGTTCCAGAGCCAGTGCTGCAGGCGCTCAGCTCCCTTGGATTTAAAGCACCTACACCTATTCAAGCTTTGGCTTTGCCACCCGCCATCAGAGACCATATGGATATATTGGGTGCTGCAGAAACGGGAAGTGGAAAGACCTTGGCTTTTGGTATCCCTATGATTCACAGCATCCTGGAGTGGAGGAAGGTTCATGAGGAGATGCTGAGCGGCCAGGTGGAAGCAAGGAAAGAGCAGCAGGGCATTCGGCTGTCTGCACCTAGTGACAACACCGAGGAACCTTCTGAGAGTGCCTCAGATGAGGACCCTGAAGAAGAAGGACGAgtagaggaggtggaggaggaagaagaagaagaagatgatgaGGAAGAAATCAGTGACACACAGATGATGGGCTGTGTTAAAGTAATAGAGGATATAGAGTTTGACTTTGATACCCACGAGAAGACTAAATCCAAAGCTAAACATAACCCTAACAGCCCACTGCTGGGGCTGGTTCTCACACCAACCAGAGAACTTGCCGTGCAGGTGAAGCACCACATAGATGCTGTGGCTCAGTTCACAGGTATAAAGACGGCTATTATCGTAGGGGGAATGGCTCCACAAAAGCAGGCCAGAATGCTAAACCGCAGGCCAGAGATTGTGATTGCCACACCAGGACGCCTCTGGGAGTTGATTAAGGAAAGACACCCACACCTTTTGAATCTCAAAAAGCTCAGGTGCCTTGTCATTGATGAAGCAGACCGCATGGTGGAAAAGGGCCACTTTGCAGAACTGGAGAACCTCTTAGAGATGCTCAACGACTCCCAGTTCAACCCCAAGAGGCAGAACTTCGTGTTCTCGGCCACGCTGACTCTGGTCCACCAAACCCCGAGCAGGATTCTCCAGAAAAAGAGAGGCAAGAGGATGAACACGCAGAGCAAGCTGGAGGCGCTGATGGAGAAAGTGGGCATCAAAGCCAAACCCAAAGTCATCGACCTTTCCAGAAAGCAGGCCACGGTGGAATCTCTGACGGAGACGCGCATCCACTGCGATGCTGATGAGAAGGACTTCTACCTCTATTACTTCCTGAACCAGTACTCAGGCCGCACGATGGTGTTTGCCAATAGTATTGACTGCATCAAGCGCCTCAACTCCTTGCTCACCATCCTAGACTGCAACCCGCTGCCATTGCATGCCAACATGCACCAGAAACAGAGACTGAAGAACCTCGAGAGGTTCGCTGAGAGAGACAATTGTATTCTCCTCACCACAGACGTGGCAGCTCGTGGGCTTGATATCCCAGATGTGCAACATGTTATCCACTACCAGGTGCCCAGAACGTCTGAAACCTACGTCCATCGTAGCGGTCGTACTGCCCGAGCCGCCAAAGAAGGGCTCAGCTTGCTTTTGATTGGACCAGACGATATGATGAACTTCAAGAAAATCTACCGGACCCTGGAGAAAGATGAGGAGCTTCCAATGTTTCCAATACAGACTAAATGTATGGCATCAATAAAGGAGCGTGTGAATCTGGCGAGAAAAATTGAGAAGATCGAGTTCCACAACAGCAAAGCCAAGCATCACAATTCCTGGTTCCAGCAAGCGGCCGAGGCTCTGGAGGTAGACCTTGATGATGATGTTCTCATCGGTGGAAAGAGGGATGAGAATGAGGACAGGGAGCAACAGAATATGGTGAAAAGCATGAAGAAGCATCTCAAATACTTGATCACCCAGCCTATATTTAAAACGATGATGAAGACGAAATACCCCACACAGATGGGCAAACTGCAAGTCCCTGAACTGCCCGTTAATACAGAAACGGCATTGTGCACCGTGAACAGTCAGAAACAGAAgcaagaacagaaaaacaaacctcaaaaaaacaaacagaagaaaaaagctGTCGTTGCAAAAATCGGCATTTAAATGGATCTAAAGAAAAAGGCCACATCTTTCATTCTTTATAAAACATCAGTTTTAGATAAATGTTTGCAATAAAGCACACGACTGTTTAAACATGaattttataaattatcattttttaaaagcgACTGGAATtggtttgatttgttgattgtttctttaaacTAATAGAAAAGACAAGTTACATTGTAGCTTGTATGTCCCTGTTTACTTTAAGTCTAAAGGATTTGTTGAGCAAAGCCTCTCTCTGTAAAATCTACTGGAGCAgcacatttctaaatataccTCCTGTTTGATGTTTGATATTAAATGGACAGGTGTGTAATTTCCTGGGTCACTGCTGGCTCTCCTTTTGTGTACTGCTTCTGTCTTACCAATTATCCTGTCAGCTAGAAGCTGCCTGTGTTTAAAAGTTTGGCAAAAGACATAATATACCACTTTAAATATCTATGCcaaaaaaaagatgcatctgttttctaataatattatttgagTATCACAAATGATGCCAAAGTTGTTTGACTTCTATCGATTGCGATTGTCATTAGCCAGTTCTTCATTGAAGATTcatcttaatttaattcagcGTACCACTGTGTAAGTATATTCTGTATCGCAATCGCAGGCTGTAAGCAGTGAGGGCGGACTTAATGAACAATCTTCCATTGTGTCAGATTTTTGTGTCACCCTTGAGAAAGGAGCCTTACCCATATTGTTCCAATAAAATCCCAACATTACAAATGGATACCCGTGTACATTGCTTtggtaatattaataataaatcacaagaCTGGTGAGTCACCAACACACAGAGAAGCAGCTGTTCAGTACAAtcaataaatgtgaaatgaaatgaaattcaaaACGG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000127 True 3601 mRNA 0.45 9 4837585 4843986

Neighbor

gene id symbol gene type direction distance location
AMCG00000126 NA coding upstream 28078 4807168 ~ 4809507 (+)
AMCG00000128 LOC107698615,LOC107568572 coding upstream 34159 4796369 ~ 4803426 (+)
AMCG00000120 NA coding upstream 76771 4756984 ~ 4760814 (+)
AMCG00000121 NA coding upstream 131659 4685589 ~ 4705926 (+)
AMCG00000110 NA coding upstream 483338 4324509 ~ 4354247 (+)
AMCG00000132 NA coding downstream 29314 4873300 ~ 4892210 (+)
AMCG00000133 NA coding downstream 87749 4931735 ~ 4934196 (+)
AMCG00000159 unc79,LOC106586068 coding downstream 96662 4940648 ~ 5085947 (+)
AMCG00000135 NA coding downstream 273096 5117082 ~ 5122230 (+)
AMCG00000137 NA coding downstream 326075 5170061 ~ 5171426 (+)
G148200 NA non-coding upstream 255034 4582311 ~ 4582551 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding upstream 661869 4173437 ~ 4175716 (+)
G148143 NA non-coding upstream 675274 4160855 ~ 4162311 (+)
G148119 NA non-coding upstream 824182 4011654 ~ 4013403 (+)
G148075 NA non-coding upstream 958064 3876371 ~ 3879521 (+)
G148396 NA non-coding downstream 509965 5353951 ~ 5354185 (+)
G148402 NA non-coding downstream 538582 5382568 ~ 5388814 (+)
G148452 NA non-coding downstream 696693 5540679 ~ 5544478 (+)
G148459 NA non-coding downstream 833997 5677983 ~ 5678620 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding downstream 871607 5715593 ~ 5719481 (+)
AMCG00000113 NA other upstream 644552 4112120 ~ 4193033 (+)
G148040 NA other upstream 1076961 3760179 ~ 3760624 (+)
AMCG00000093 srp14,LOC106610862 other upstream 1113269 3720985 ~ 3724316 (+)
AMCG00000094 NA other upstream 1138492 3690772 ~ 3699093 (+)
G147726 LOC104962440 other upstream 2433613 2403730 ~ 2403972 (+)
AMCG00000136 btbd7 other downstream 244453 5088439 ~ 5161195 (+)
AMCG00000145 NA other downstream 463204 5307190 ~ 5314953 (+)
AMCG00000146 NA other downstream 490527 5334513 ~ 5340550 (+)
AMCG00000142 NA other downstream 591172 5435158 ~ 5454206 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 1037037 5881023 ~ 5888027 (+)

Expression


Co-expression Network