AMCG00000138


Basic Information

Item Value
gene id AMCG00000138
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5159727 ~ 5175119 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000138
GACCTCCATATGCATTCTCTGAACTGCCCTGCCCTGGCCTTTCTCCCGTTGCAGGAAGGAGTATGGAGAATGATGAACTTCCGTCAGCGGATGGGATGGATCGGCGTGGGGCTGTACCTGCTGGCTAGCGTGGCGGCCTTCTACTACGTCTTTGAGATAAACCAGACCTACAACCGGCTGACGCTGGAACACGTGGAGCAGAAACCCGAGGAGCCCCAGCCTGGAGCCACCTCCTCTTCGTCCTCCTGGGCCCACAGCCTGAAGATGCGCCTGCTGTCCTTCCCCTTCTGGCTCTGGGCCACCATCTTCCTCATCCCCTACCTCCAGGTGTTCCTGTTTCTCTACTCCTGCACCCGCGCCGACCCCAAAACAGTGGGCTACTGCATCATCCCCATCTGCCTGGCCGTCATCTGCAACCGGCACCAGACTTTCTCCAAGGCCATGGCGGTAAATGAAGGGGATGAGGCGACTGTTTCTCTGGTGGATGTTTTGGAGGAAGACGAGGAGTTAGAGAACGAAGCCTCTGCCGTCTTGGGGGGCAGCGATCCCGAAAAATGCTCTTACCCCGAGGGCTACGTGAAGCGCCAGGCTCTGTATGCCTGCAACACCTGCACCCCCAAAGGAGGCGAGCCGGCGGGGATTTGCCTGGCCTGCTCTTACAAATGCCATGAAGGCCATGACTTATTTGAGCTCTATACCAAAAGGAATTTTCGCTGTGACTGTGGAAATGGCAAGTTCAAAGACTTTGAATGCAAGCTGTACACTGATAAAGACAGGCTGAACaccaacaacaaatacaatcatAACTTCTTTGGGTTGTACTGCACCTGTGAGAGACCTTACCCAGACCCTGAGGATCAGGTGCCAGACGAGATGATCCAGTGTATCGTGTGTGAAGACTGGTTCCATGGCAGGCACCTGGGCTCCGTGCCCGCCGAGAGCATCGAGCTGCAGGAGATGGTCTGTGGGTCGTGCATGGACAGAGCCCCCTTCCTCTGGGCCTACGCTGCACAGCTGGCAGCCCCCTCGGTGACGAGACTGAGCCCCAGCAAGGCCGAGGTGGATGTGGAGGTGGATGTGGAGGACGGGCAGCACGGGGAGGAGAAGAGCCCGGGGTGCGGAGAGGAGGCGAAGCAAAGCGTCAAGAAGGAAGCAGAGCAGCCCTGCACCAGCACTGCCTGCGAGGAGAAGGCAGTGGCAAATGGGGAGACGGGCTGCAAAAGGAAATATGATGAGATGGAGGCCGCAGCTGAGTGTAAGACGGAGACGGCAGGATGCAAACTGCAGGAACTGAAGGCCAAGGGTTTTGTGAAGAAGGAAGGAGCAATCTTCTGGCCGTACGTCTGGCGTAGCAAGCTGTGTACCTGCACTGACTGCAAGAAAGCCTACGTCAAAGCGGAGGTGCCGTTCCTGCTGGACGAGTTGGACACGGTGCTGGCCTACGAGCACAAGGGCAAGACGGAGCAGGAGAGCGCGGCGGAGGGCAGGGACCCGCTGATGACGGCGCTGAGCAGCATGGACCGGGTACAGCAACTGGAGCTCATCTACGagtACAATGATCTAAAGACTGAGTTGAAGGATTACTTGAAGAGATTTGCAGATGAAGGCAAGGTGGTGACCAGCGAGGACATCCAGCGATTCTTCGAGGAACTCCGGTCGAAGAAGCGGAGGCGGATGAGTGGCGGCCAGTACTACTGCAGTTGAACAGGGCCCGCCTCCTCCCAGCCACGCCCCTCGACCCCGTCTTCACGAAGAGCAACATTTTCCGACGTTTAGGATTTGTTTAACGATCAGAGCcacgtgttttttttgtttttttaatctatctTCGAAAGAGCGTGACTGTCCCACATCCCCACggctgcttttaaataaaaacgcgtcctaaaaaaaaatatatacatacataaggTATTTGTAGGAAGTTCTCGTGGCTCTAAAGGTCCCTATTTAACACTTTGGGCTGCTGTTACAGTTTAAGGCCCTGCATCTCTTTGTATATGCCTTAGTATTGTTTTAGTGCATTCGTCTCTGTGAAAGACTAGGGGCCGACAAACGACTGTGTGTAGAAATGGGCTTCTGAACGCGTGCTCCAGGTGACGAAGCAAGTGGCATGTAGTTCTCGTATCGGTTTTTCCTGTTTCGGCtctttgaaaatgcttttcctCGTAAAGCTCTCCGTGTTCAGAAGAATGGCAGCGTTGTGTATCAGACGTCACACGTGGACTCTGGTCCGTGCAGCATGTTGCTAAGTTAACCATGAGATACTTAGTAGTATTACTTCTGTCCTTAATGGCTCTTTCTAAGATCCTTGTAATCCGTAACCAAAAGGGGGTACATTCCTGTTGTGTGCACTCGGCAAAATCTGATTAAAGTTTGTTATTGATCaggtaaaataatgatttaaaataataaggaaaatataatCGATAGAAAGCAGGAGTATTAACTACCCCACGAGTAGGTTTTCAAATCATATAATTGATCACTTTATTCATTATTACAAAACTGGTTGTAACAAAAGAGAAACTGGTGTTGAAGGTTAGTTAGCGGAGAACTCTGGATGTATAGGATGTTATGATGACCGTTTTTAAATCAACCGTGATTTGTTTTGCGTCTCTTTTGTAGTATTTCCTTTTTACTTTCAGCATttctgacaaataaaaacaaaaaatgttg

Function

GO:

id name namespace
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11979 UBR7; E3 ubiquitin-protein ligase UBR7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000138 True 2679 mRNA 0.51 12 5159727 5175119

Neighbor

gene id symbol gene type direction distance location
AMCG00000160 NA coding downstream 92902 5000865 ~ 5066825 (-)
AMCG00000134 NA coding downstream 266360 4892489 ~ 4893367 (-)
AMCG00000131 NA coding downstream 299238 4843992 ~ 4860489 (-)
AMCG00000129 NA coding downstream 322177 4807171 ~ 4837550 (-)
AMCG00000130 NA coding downstream 363578 4765184 ~ 4796149 (-)
AMCG00000140 NA coding upstream 67909 5243028 ~ 5256388 (-)
AMCG00000150 NA coding upstream 99556 5274675 ~ 5285432 (-)
AMCG00000149 LOC107721334,LOC107659197,LOC107585782,LOC104966051 coding upstream 118069 5293188 ~ 5306080 (-)
AMCG00000151 NA coding upstream 137364 5312483 ~ 5319529 (-)
AMCG00000144 NA coding upstream 223268 5398387 ~ 5407241 (-)
G148198 NA non-coding downstream 611667 4547824 ~ 4548060 (-)
G148181 NA non-coding downstream 928399 4230642 ~ 4231328 (-)
G148041 NA non-coding downstream 1399110 3760302 ~ 3760617 (-)
G148011 NA non-coding downstream 1471496 3687963 ~ 3688231 (-)
G147997 NA non-coding downstream 1517058 3642365 ~ 3642669 (-)
G148364 NA non-coding upstream 61749 5236868 ~ 5240683 (-)
G148400 cdca4 non-coding upstream 202630 5377749 ~ 5380128 (-)
G148416 NA non-coding upstream 275881 5451000 ~ 5454248 (-)
G148417 NA non-coding upstream 280127 5455246 ~ 5455489 (-)
G148486 NA non-coding upstream 535900 5711019 ~ 5711876 (-)
AMCG00000161 NA other downstream 82481 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 1600826 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4218892 890112 ~ 940835 (-)
G147324 NA other downstream 4674144 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 4767245 387118 ~ 392482 (-)
G148395 NA other upstream 163690 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 829067 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 870546 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 975601 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 1032395 6207514 ~ 6209957 (-)

Expression


Co-expression Network