AMCG00000140


Basic Information

Item Value
gene id AMCG00000140
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5243028 ~ 5256388 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000140
TAAACCGTAGCGTACAACTGGGGGGACAGGAGAGCACTGCAGCAGATGTGGATGAAGCTCAAACTCGCCAATAACACTCATTGTAATTACAAGAAGAAATATAATttcccaccagagggaagaaaGATCCTGGCGCAATAACATTGACTTTTCTTCAAGGGGGAACTGTAGATCTCTGTGCAGAATGATAACAAGAGGATGCTTGGTTTTGACTTTAATTGTCAACAACGTGCTGTCACTACCACTATCTTCAAATCACGTGGACAAAGATGATGCCAAGGTGATGAAATGTATCGTGGAGGTCATTGCGGACACATTATCAAAGCCCAGTCCTATTCCCATCAGCCAGGAGTGCTTGGACTCTCTCAGGGGAGATGAAAGAATAATTTCAATTCTACGACATCAAAACCTACTGAAGGAACTCCAGGAGCTGGCGACCCAAGGTGCCAGCGAAAGGGCgcagcagcagaagaagagCAACGACCTGGCGGATCGCATTTCTGCCGTCCTTGAGGACCACGTGGACAAGGACGATATAGCAGATCGCTCCATGCTCAAAGCTTTAGAAAAGCCTAGAAGAGAGGGACTGAGGGGACAGAGCCAGGTTGCAGCAAAGAGGGAGGCAGAGAATGAAGTGGAGGAGAGCTTGGCCCCTGAGGAGGGGTCACGGGAGGGCAATGACATCGAGGAGGCCAAAGAggaaggggaaggagaaaacGCCAGCAAGCACGTCACAAACTCCCTGAgcgaggagggggagagagccaCAACTGGAGAGGAAGAGGCTGAGGAAGAAGGAGAAGCCATGCAAGAGAAGCAGGAGACACCAAAGCCCAGGTCCGAGGAAGGCGCCgagagcacagagagagacggcACCGCCctagaaaagaaagacaacacTGAGAATGAAACCGAAGAGGAAGACAGTTCCCAGGTTGACAAAGACGGCACTGAGACAACGTCCGTGACCACTGTTCCTGAGGTACCCAAAGAGGAGAAATCGTCCCTGGAAGGAGAGGACAAAGATGGAGAGGAGCAGAGGCAAGAGAGAAGGTCGggtgaggaggaagagaaggtgaaggagaaggaagaggaagaggaggaggagggagaaaagaagaagaagaagtgcTGCCCTGAAGGGGAGGAAGGCAatgctgatgatgatgaggaggtTGAGAAGAATGGAGAGGATTCTAAGCGATGGAGTCGAATGGATGAGCTGGCTGAGCAATTGTCCTCAAGGAAGCGCTCCCAGGGAGTGAGGGGagtgcaggaggaggaggaggaggaggaggaggaggtgggaggGAAGTCCACAGAGGTCTCCCAGACGCCCCCCCACCTTAATAGAGACCTCACTGAACAGCCGCCCAGCATGCCACACCACTCCAAGGAGGAcagtggagagggggagggggccagGACCCCAGAGGTGGCCGAGCTGAGAAGGATGGCTCTCAAGGAAGCTGAGGAGAAGCGTGATGAGGAAGGCAGTGCCAGCAGGAAAGCAGAGGACCATGAGATTGAGAGCCTGGCAGCGATCGAATCGGAACTGGAAAACGTCGCTCAGAAGCTCCACGAACTGAGAAGGGGCTAAACTTTGAGCTGGAGGCTGGACCGGCATAttttccccctcctcccttCGTCCATTTACAAAAGTGCATTTCAAGCCTGGCTCTGTGTCTCTATTTCTCGAAAGAACACTGGTTTTTCGTCTTGGCCCCACAAAACCTGCTGGCTCTGTTCCCCGTCCCCACGCTCCAATCCCCCGCCTCCTCTCCAGTTCCCGTTCCCTCGCCCACTCCCCTCCTGTTGCCTTCTCTCCCACTCAGTGTGCTAGGGCTCTGTTACAGTATGTCGCCTGctaatcaaatacaattttttgcACTGTGCAAAACGATGTGAATTATAATAGCAACAACACTAATGGTAATGTAACaaatttaataatgaattaaaggTAATAAATTACCATCAGGGGGCGGTATATTCTCGGTGTGTTAGTGTAtccatttgaaacaatgtattctttctagaATATTGTTCTTAATAATGAAGTTACTTTTGATCTTTGTTCTCGAAGAAGAAACACATGCAATaactttaataatttttaatagGGGAATGATTGGAACTGTAATACGTGCTGTATGGGAATTTATCtaagaaaatcaataaattgGATGGAGTTATCTGATGGGCTGTCTG

Function

GO: NA

KEGG:

id description
K19990 CHGA; chromogranin-A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000140 True 2211 mRNA 0.50 8 5243028 5256388

Neighbor

gene id symbol gene type direction distance location
AMCG00000138 NA coding downstream 67909 5159727 ~ 5175119 (-)
AMCG00000160 NA coding downstream 176203 5000865 ~ 5066825 (-)
AMCG00000134 NA coding downstream 349661 4892489 ~ 4893367 (-)
AMCG00000131 NA coding downstream 382539 4843992 ~ 4860489 (-)
AMCG00000129 NA coding downstream 405478 4807171 ~ 4837550 (-)
AMCG00000150 NA coding upstream 18287 5274675 ~ 5285432 (-)
AMCG00000149 LOC107721334,LOC107659197,LOC107585782,LOC104966051 coding upstream 36800 5293188 ~ 5306080 (-)
AMCG00000151 NA coding upstream 56095 5312483 ~ 5319529 (-)
AMCG00000144 NA coding upstream 141999 5398387 ~ 5407241 (-)
AMCG00000158 pcnx1 coding upstream 215773 5472161 ~ 5516402 (-)
G148364 NA non-coding downstream 2345 5236868 ~ 5240683 (-)
G148198 NA non-coding downstream 694968 4547824 ~ 4548060 (-)
G148181 NA non-coding downstream 1011700 4230642 ~ 4231328 (-)
G148041 NA non-coding downstream 1482411 3760302 ~ 3760617 (-)
G148011 NA non-coding downstream 1554797 3687963 ~ 3688231 (-)
G148400 cdca4 non-coding upstream 121361 5377749 ~ 5380128 (-)
G148416 NA non-coding upstream 194612 5451000 ~ 5454248 (-)
G148417 NA non-coding upstream 198858 5455246 ~ 5455489 (-)
G148486 NA non-coding upstream 454631 5711019 ~ 5711876 (-)
G148610 NA non-coding upstream 891541 6147929 ~ 6148286 (-)
AMCG00000161 NA other downstream 165782 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 1684127 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4302193 890112 ~ 940835 (-)
G147324 NA other downstream 4757445 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 4850546 387118 ~ 392482 (-)
G148395 NA other upstream 82421 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 747798 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 789277 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 894332 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 951126 6207514 ~ 6209957 (-)

Expression


Co-expression Network