AMCG00000142


Basic Information

Item Value
gene id AMCG00000142
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5435158 ~ 5454206 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000142
ATGCAGCTACTTTTTCGAAATGCCCACGCCATCGGAAAAAAGGGCAGGCCTTTCACCGACTTCGCATGGATGTATCAGCCAAAGAAACATAATGACATGCCCCTACAAGTGCACAACCCTGAAGTTGTTTGCAGCAGTGCTCCAGCTCTTGCGAGTTTGCAGGGTGTAGGTTTACAAATCCCCAGAGAAACTCGATTCCCACGGGGAGGGAGGGGCACGGGCTACATCAGTGGCTCCGGGCCAAGCACCCTTACCCTTGATGTGCCCCTTGAAATCTTAGAAGGGGAAAGACCCCGACCCCAAGGCTCCTCCCCAGTGTATGAATATCCAGTCCCAGagaaatacactgaaataaacaaacagGAAATTGAAACCATGGAAGGATCAGATGTGATTGTGAACACAGAAAAAGAAGCATGTGCCAAAGGATTGGTCGTAAGTGGAGGGGGAAAGGACGGGATATTCGTCAAGGAAGTAATGAAAGAGTCGTCAGCGTCTAAGCGTCTCAGCCTGATAGAAGGTGATCAAATACTCAGTGCAACAGTGTTTTTCGACGACGTCAAATATGAAGACGCCCTGCAGATTCTGGAGCATGCCAAGCCCTACAAAGTGCAGTTTTGTCTGAAGCGCCACTCATCCATGACATCTGAAGGTTCCTTAACTAGCCTACAAGAAAGTGAAAAAGCCACTATGGAGAGAGGCCGCTCGAAAACTCCCCGCCGCCAAGAGGCCAGAATTTCTTGGCCTAAATTCCCGTCATTTACAAGGGGACgcaaaatgcaattcaaaagATCTCACAGCACTTCCGAAGCAGAGGAGCAGAAAAAACTAGATATGAGTCCAACATCCAGTGACACAGAATCTCCAACTAAAGGTCAGGAGCCTctgaaaaccaaaatgaaaaagccCAAGTTAAAGCTGTCAAACCTGGGAATTAAGGACCTTAGCATCCAATCAACAGATCAGCACACTACAGAGACTGTAGCAGAAAAGTCAGAGCATTTGGAAGTCATTGAGAAATCTCCAATGAAAGATGAATCCATGGTGCTTTCTTCCAAGCATCCACTAAGAAAAGAACAGGAAACACCAGAGATCTGTGCCTTCGAATCAGATGAAAATGTGGACACCACCAAGATACAAAATGAGTGCTTGCTTCCAAATGTGACAGGCCCTGAAGTTGAAATTAGCCAACACAAAGCAGAACTCATTTCTCTGGATAAGACACTCAAAACCACTGACATTTCCATTTATGGACCAAAAACTGATGATATCCTTGTTGAACCTGGTGCAGAACGTAGCCGCCCTAAAAGAACTCCAGAAGGAAAGAgaaggaagaagaaacaaagaTCAGAACTTAAAGTGAATATTAAGGGAAAAGAGAAAGGAGACTTAAGTCCTGATCACCAAGCAACCTCACCTCAAACATTAATTCTTATACCGTCGCCCCACAGTCTGGGTCCGGAGGTTCAATTTGAGCTTCAAACAACAGAACCTGGAGGCAAAACCACAGAGCAGCTGCCTCTAGGAGATGCCCCAATAAGTCCCAATGTAGTATCACATGCTGAATTGAAGGGACGTCAACTCGCCATTGATATAAACACTCAAAGAGTAGGTTCTAATAGATCTAGTATTAAAGTAGATGTGATGAAACCAAAGGTTGATGTTATGAGTACAAAGCAAACAATGAAAACTGAGGATGGCCAAAAGGAAGGATCTGATGGCCAGTTTGATGCCATTACACAAAAAATGGGGCTTCAGGTTCAAGCCCCCATCCTCAAAGTGGACAAAGACAGTAGAGAGAAGAGGCTCCCTTCACCAACAACTAAATCTGTTCTAAAATCATATGAAGCAAAGATGGAAGGCCCAGCCATTTTGGCTCAAGCTGAAAGGTGTACGATTAAGATGCCAAAAAAAGATGAGGTTGACGGGAGCATGCCAGAAGGACATTTCTCACTTAGAAAGCCACCGATTGGTCAACAGGTGTCACCTAGGACAGAGCCTGGAAAGCAAAGCAAGGACGGAAGCATACATGTTCCAGCACCAGAAGTAAGCAAAATGGTAATCAGAGGCCCATACCTGGAAATGGGCATGCCAGAGAAACATATCTTGAGTTCAGTAACAGAAATCCATACACCAAAGTTTGAGGGCAGTGATATCAGTGCTGCCACAACAGCTACTTTCTTGCAGACAGGAGATTTACGTATAACGAGGCAAACGGAACTGGAGGACATAAAAACTGCACAGGCAGAACCCACAAGTAAAACTGACAAACCTAAAATTCCTAAAACAGTTATCTCTCTCCCTGGTATTGCAGCATCTGATGAGGAAGCTGCCCTAAGCAAATCAGAGATGTTCAGCATGTCCAGGACTAAAGCTGATGTTTCCTCCCTGCCACCAGTTGTTGCAATTAAAAGCCCAGAGATGAAAAGTGAACCAGATCTTCCTCAGTCAGAAGGGAAGATAGATGTTAAAGGTTATGGGGTGGATGTACAAGCTCCAAAAATTCGTGGAGAACTGGATGCTGATGATACCATAGGTTCAATTGAAAAGTTTAAACTTCCACAGTTCAAGGTGCCTAAAATGGACCTCTCTTCTCTGGATGAGCACGAACATATCACAATGACAGATGTGAATGCTGCCAAAGCAAAACCAGACATAGTaaaagcagaaattaaagcacctAAAATGGATGTAAATATCCAATCAACAGATGCTGACAGTGGGGAAATAAAAGGCCCAAAAGGAAAATCTGACATGCCAAAACTGGAAATGGCTGAAGTGGACGTTCAGCTACCTAAAGTGAAACCACATAAATTTGGACTGAAGAAGCCAAAATCAGAGACTGgcctttatttttcaaaaccagAAATGCAAATCCAAGGTGTCAACATAGATGCCCAAATTCGATCTATTAAAAGCCCAGCTGACATCCCTGAAACTCAAATGGAGAGTGTGAAAGGAAAATTCAAGAAGCCTGAGATTAAAATACCTTCTGTTGGACTATTATCTGGAGAGTATGAGACaaccattacaaaaacagacatcTCTCACCCAAAGGCAAATATAGATATGGGTAAAGTACAAGTGACAGGCCCAGTGGTTGATCTTGAGGCTTCAGCAGCCAGAGGAGTCACTGATAAAGAAACAAAGGGACCTGGAGGAAAATTCAAGATGCCGAAGATAAAAGTGCCCCAAACTGGATTTTCAAAATCAGATGTAAAAGTCCCTCTAACAGATGTGGACATGAATGTTCCACATGGAGAAGTGAccctgaaagaaagaaagatagatgTTAAAGTCCCTGGGCTGGAATTACAAGCTACAAAGATCCAAACACAACTGGAAGGTGCAGGTATTCAAGGATCAATGGGAGACTTAAATCTACCTACATTCAAGTTACCTAAAGTTGACCTCTATGATCTTGATGGACACGAACACATCCGAGTGACTGATGTGAATGCTAGCAAAGCGGAAGAAGCCATCGGAATTAAAAACCGCAAGATTAAAAGTCAACCAGATCTTCCTAAATCAGAAGGGAAGATAGATGTTAAAGATTCAGAGGTGGAACTACAAGCTCCAATTATTCACACAGAAATGGATACTGATGATATCATAGCTTCAATTGAAAAGTTTAAGCTTCCGAAGTTCAAGCTTCCACAAATTAACCTCTCTGATCTGGATGAGCATGAACATATCACAATGACAGACGTGAATCTTGCAAAACCAAAACCAGACATTGCAACAGATAGTAGTATTCCCGAGTTCAAACTACCAAACATTGATCTTTCGGATCTTGTTTCGGATGATGTTCACAAACCAATTACAATGACACAAGTTGATGTTTCTAGCagcaatgtaaaagcagaaatgaaagcactCCCCAAA
>TU186772
ACTAAATGCGGCGGTGGTTGGGACTGGGGGCGAGAAGAGGAACGAGCCAGGGGATGAAGACAGAGAAacgaagaaaagaaaatgtaatgccaAATGGCTGACGGGTCGCGAATGGCTTGTGTTTGATCATGAAAATGTCGTCATGTTTTGTCAGGATTGCCGCATCTACgcgaaagaaaaaaacaaaacgaacaaTTTCGTGGTGGGaactaataattttaaattcGAGGCAGTAAAGGACCATGAGAGTCATCAGGTCATCAGTCATCAGGAGAGCCTTAGCATTAAAACTGCCAAGACAGGTCGTATTGAAGAGAGCCTTGCTGGGAGAAGCCTCGCTTTATTGAAGACGTCTGAGTTGGAGAAGATGCAGCTACTTTTTCGAAATGCCCACGCCATCGGAAAAAAGGGCAGGCCTTTCACCGACTTCGCATGGATGTGTGAGGTGGACAGGAAGAAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000142 True 3885 mRNA 0.43 7 5435525 5454206
TU186772 False 463 TUCP 0.47 2 5435158 5435762

Neighbor

gene id symbol gene type direction distance location
AMCG00000141 NA coding upstream 39385 5390325 ~ 5395773 (+)
AMCG00000147 cdca4,LOC106599634,LOC106610950 coding upstream 54999 5375615 ~ 5380159 (+)
AMCG00000152 NA coding upstream 61821 5340902 ~ 5373337 (+)
AMCG00000148 NA coding upstream 106125 5320345 ~ 5329033 (+)
AMCG00000139 itpk1,LOC106597151 coding upstream 197871 5207350 ~ 5237287 (+)
AMCG00000143 NA coding downstream 9743 5463949 ~ 5470513 (+)
AMCG00000155 ttc9 coding downstream 78404 5532610 ~ 5535596 (+)
AMCG00000170 NA coding downstream 381280 5835486 ~ 5844974 (+)
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding downstream 416032 5870238 ~ 5874652 (+)
AMCG00000165 NA coding downstream 485259 5939465 ~ 5967106 (+)
G148402 NA non-coding upstream 46344 5382568 ~ 5388814 (+)
G148396 NA non-coding upstream 80973 5353951 ~ 5354185 (+)
G148200 NA non-coding upstream 852607 4582311 ~ 4582551 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding upstream 1259442 4173437 ~ 4175716 (+)
G148143 NA non-coding upstream 1272847 4160855 ~ 4162311 (+)
G148452 NA non-coding downstream 86473 5540679 ~ 5544478 (+)
G148459 NA non-coding downstream 223777 5677983 ~ 5678620 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding downstream 261387 5715593 ~ 5719481 (+)
G148519 NA non-coding downstream 397439 5851645 ~ 6045324 (+)
G148545 chp1 non-coding downstream 563837 6018043 ~ 6029777 (+)
AMCG00000146 NA other upstream 94608 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 120205 5307190 ~ 5314953 (+)
AMCG00000136 btbd7 other upstream 273963 5088439 ~ 5161195 (+)
AMCG00000113 NA other upstream 1242125 4112120 ~ 4193033 (+)
G148040 NA other upstream 1674534 3760179 ~ 3760624 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 426817 5881023 ~ 5888027 (+)
AMCG00000175 NA other downstream 546705 6000911 ~ 6011397 (+)
AMCG00000201 NA other downstream 1015139 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 1046687 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1836460 7290666 ~ 7296965 (+)

Expression


Co-expression Network