AMCG00000144


Basic Information

Item Value
gene id AMCG00000144
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5398387 ~ 5407241 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000144
gccaatgggatcgccGGGATTCTGTCCCCGGAGCCCCGCCCCCTGGGAGGACGGAAGTGCGCCGCCCGCACCTGTCCGACAATCACGCCGCGGCACAGGTGCGCCCATCGCCCATCGCCCCTCACCTCACTACTGCACGTCTCTGTTTCATTCCTCGTCGGACGCGAGTCTTAAGTAGTGATCAGATCATCAAGAAATGAAGCGATTTCACATCAGACAAGTCCAAACACAGACTAACCGACTAGTGCATTTTCACTTTTGATGACCACATTCTTACGTGTACTCTGGATCAAATCTGCCCGATCACAACCAGGAGTTCATGATACCCAGAGGTCAAAGGATATTATGAAAAGGAAAGGTCACGTTGGAGAAAAATGTAGCCAAAAATAAGTGATGTCGGCGCTCCTACCTTGCGTAAAACAGCGCACTCGTCATTTACCTGCAATGTAGAGCGAACTTCCCATCGCCAACACTGGAGACTCGACAGGTTGAAGGAGAGGCAGCCGTCCAGCACATACAAGGACAAGTTCTTCCTCGTCTTGAACATTCATTTAACAGCAATGAATCCGTCTTGGGACAGCGGTTGGAACAGCAGCCGCACATCTGGCGCAAACATTGGAGAATGCGCAGATGCGTCTGCGGTTTTTAACGGCATGGAGGAGTTTCAGCAGCCGGGCACTGACCCCAGAGACAGATCCTTCGGGGAATGGGGCTCGTTTAACGACTGCGATGAGTTTGCAGACGGCAGCTCACCCACGGAGATAATGACACCAAGAGACACGTCAAACACAGATGCTCATTCCAAACAGGTGTTGGAGACCAAACTACAAACGGAGGATGTCCGTGTTACCAGTTACGGGCAAGTTTTGCAGGCTtgcttccctctccctctctgctctgTGAGCGCTGCAGAGATCCACTGGGAGCCTGGGCTGCTCTCCGACCTCCTGGAGCCCTCCCCAGGGGAAAGCCCCTCTGATGCCCCAGCCCAGCTTCCATGttgcGATGGTGCCACCTTGTGGAGCTGTGTGCAAGGTGACCTCCGCACGCTGGTCCCTACAGATCACTGGACACACTCCCGCAGTCACAGGTCACTGCTGGCCGCTCTCAGAGTCTCGCCAGGGGGAGagAGTCCAGCGCCTGTGGAGGAGGAATCTCTGGAGAGCAGCAGGGAGTCTTCGTCCCCCTCCAGCAAAGAACTGATCCAGACCAAGTTGCTGGGGCCTTCCTGTTCCCCAAACGCCCCCCACTTTCTCTACCAGATCTCCCAGCAGTGGCTCACCAGACAGCACCTCCAGCTGCACGTGCACAGCAACAAGAAAGGCTACTTGTTCTGACTAGCTCTGTTTGTCCCGGAGAACCAGAGGACTAAAGTGATCATGTTGACTAGGAGTATATTTATGtaggtttatatttttttatatatatacttgttGGTTGCGAAACATCAGTAGAATTCAGTATAGAATGTAATTTTCCTTCTTTTACTCAAGAACAGGTGATAGTGTCATAACTGTGGTGCTTGAAGATATAGATATGAGTGCTTTTTACACACATGCTACATACACTAAGGTGCAACTTTCTTCTGATCGTCGTTGGTTTCAGGCTTTTAATTTTTACTTCCCAATTCTTTAAATATCCCTTACATCTTGTTTGGAAGATAACTTCCCACATATATTTTGAGCACATTTTTGTCTAAGGTTAAGAATAGGggtgttttgttattattttcttgttagcaacatatatatatatatatattgtatttattttttcatatcaaAGTTGTGTGATAAACTGTGATTGTGTTGTGATTGAAGATGTACACCATTCAGTCACTGTCACAGGGGTGAAACTTCATGGAACAGACTTGAATTGTACAAGAACATCAGTGAGAATCAGCCAGGCCTTAGGCAGGGCTGAAGATCTTATGAAGGCTGGACATTTCAAACCATATCATGCACATATTCTTTGTGgtcttttaaattgtgtgttagAACCCCCTCCAGCAACTTTGTGTTGCCACGGCAAGTTTGCTCCTCAGTGTTCAGGTTCTGCTCTCGTGTGGTCGCTGGTTCTCTGGCATCTGTAAATGTTAAGGTTCAAAATTCTGATTATCTCCTTGCTTCTGTAGGACAAGGACATTGCTGCCCCTTAAGAAAGGACCCAAAGGAATCGCTGTATGACTCAGATTCCTTGTGCATATAGACGTTCTGTTTGCCATGAACACTGGGAGAGAAATCCTTCTGAGTTAATGGGCTGTTGGACCTGAAAGGAGCTGTAGCCGAGCAAAACGTAAAGACATGATGACGTGTGCATAACATCTCCTCTGGTCAAAGGTCAACAAGCAGCCCGTCCTATACGTTTTACTGGAGACTCTTTTGGTTCTCTAATAAACCTCCATTACTGCTTAGACTATTTGTTGCTAAATTCATGTAAGgcaaaaaccaaaaataaaataacctctAAATCCCTACGGTCCGTGCGTTAGATAAAACAGACACCATTCTCGTTGCTGTGCAGCTCAGGAGCCGTGTTGTTTTTGTGCCCCTTGGAAAGAAATCAGGCCTCTCAACCCAGCCAGATGATCTAATTCGCAATACTGCCTTGAAGAAGTTTCTATGGCCTCTCTCCAGCAGATGGCGACAGGAggcttttttcccttctccctCTGCTCGTCATATGACTTTTCTGTGCTTGAAATCTAGTTCaaccttcatttattttgctgccACACAGCACTTTTTCCCAGTTTTGTTTATCACTGTCGTTTCACAATGCAACGATAAACACAGAGCCTGTACAGTCCTAATGGCACACTATATGGATACTGCTCTTGTTCTTATTTAGAAGCGGTTTCAATAGTTGCATTAAGAACCAAGACCATAATGTAACCAATGACATAAACAGCAAATCCAATGACAGTTGTGCATGTGCCTCCAGAGATGAGAGCTCTACcacaaatgtaaaagcaataaGAGCAGCTTTGGGTTGCAAGAACTGAAGCATccttttgcaaaaaaaaattaagaatataCACAATGTTggtgtgattttgtttcattttgtcttttaattttatattgaatgATCTGCTACAATAATATTGCATAGGATATAAAGGTGACAGCGCTGTAAAAAGATGTacagaacacacaaacacacagatcgGCATCTATTATAATGCTACACACTTACCAGAGACCAAAATTAAAATCCTTGCAAAAGAACATTCACTCATGCAGTGTAGTTAAAGGTCCACATCAGTCATTGtcctttgcttttttattttcaatcacTCTAGTGTGGCTGGTAAACAACAGTGTGCTAAAATGAGAGAGCGGACTTGCCGACGAGATTCAAAATTATGGAGTCAGCTTTCCAGAGTAAAACACGTTTATATATTGCACTTAGGACATTAAAGTGAAAAAGAAATCttagcatttatatatatattttaacagcatTCTGGAAAGGTTTATAGAAGAGGTACTCCATTATTTAACAAACCAATCTTTTAGTATGTGGAGCGTCTTCAGGTGTGCTAATCAACCTCACATTCCTAGTTCAATTCAGATTTTAATGGCGTGGTCTTgcttctgttctgtgtttttatttttaagagtaCATAATACTGAATACCGCTGCATACCCATGTTGGCTGGCTTTGCTCTCCTCAAAACAGACTgcaaaaaggaagaaaaggagCGGCTTTTCATGTTGTTAAGCCATGCCAATGCTACTTTAAGTGTAATATGAAGCGGAAACCTTGAGAAGATTGTAATGCCAAAAAAACACCAGGAAACACCATGATAGGGTGACAGGAGGAAGTCTAGGTGTAAGGATTACTGTCCCAACACAGAACAGGCCACAGTTTCACTAGAGCAGGGCTTGGGAGTCCCACAGTGCCAGTTATGAAGAAAAGACTGTGAACACCTGCAGCATACACTACCTGTGAAAGGGGAGGAAGATCTGGTGGGATCAGAAGTATTGCCCAATGCTGAgttagtaaataaaaacaggaaatattcAATAATGTCACTCCTCGTGTCCGGGTGTGCCGGTTGGTGTGCTTGGAAAAGTGATGGGTCGTGTTGTGGAGGGTGTTTCTCAAGGCCCATCGCCAAATATTCACAGAATTGCCGGGACGTTGGAAGAGGGAAAGCAGTGACTCGGCTGAAGTCAGTTATTTGACAAGCTGCCAGGTGTGCCTGAAAACTGCACCAGTGTTTCACAGTCTTTTCATTGACTAGAAAGAaacctttttatatatgtaagaATGCATCTTATAAATCCTCATAAAAGGGACACAGGcaatagttaaataaaaacattcccaataagtacaaaaagaaaaatcatgatcagtaacaaattaaatatatacaaacatatttatacacaatCACAAATTGCAACAGAAAATGGCAAGTGAATGGAAAGTTCTCAGAACCAATGGGCACCAGCATTTTCTGCAACCCGCCCCAACAATTAGACTGAACCGTCAccattgttaaataaacacaatatattatcTAAAATCTTTTGtaattagattaaaaacaaaacaaaaaaaaataatgataaccacacagaaaatatctaattacagtatgtacaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000144 True 4624 mRNA 0.43 8 5398387 5407241

Neighbor

gene id symbol gene type direction distance location
AMCG00000151 NA coding downstream 78858 5312483 ~ 5319529 (-)
AMCG00000149 LOC107721334,LOC107659197,LOC107585782,LOC104966051 coding downstream 92307 5293188 ~ 5306080 (-)
AMCG00000150 NA coding downstream 112955 5274675 ~ 5285432 (-)
AMCG00000140 NA coding downstream 141999 5243028 ~ 5256388 (-)
AMCG00000138 NA coding downstream 223268 5159727 ~ 5175119 (-)
AMCG00000158 pcnx1 coding upstream 64920 5472161 ~ 5516402 (-)
AMCG00000156 med6,LOC102793293 coding upstream 114214 5521455 ~ 5528826 (-)
AMCG00000157 NA coding upstream 137588 5544829 ~ 5573070 (-)
AMCG00000154 NA coding upstream 178706 5585947 ~ 5620822 (-)
AMCG00000153 slc8a3,LOC106953081,LOC107091425 coding upstream 250942 5658183 ~ 5659955 (-)
G148400 cdca4 non-coding downstream 18259 5377749 ~ 5380128 (-)
G148364 NA non-coding downstream 157704 5236868 ~ 5240683 (-)
G148198 NA non-coding downstream 850327 4547824 ~ 4548060 (-)
G148181 NA non-coding downstream 1167059 4230642 ~ 4231328 (-)
G148041 NA non-coding downstream 1637770 3760302 ~ 3760617 (-)
G148416 NA non-coding upstream 43759 5451000 ~ 5454248 (-)
G148417 NA non-coding upstream 48005 5455246 ~ 5455489 (-)
G148486 NA non-coding upstream 303778 5711019 ~ 5711876 (-)
G148610 NA non-coding upstream 740688 6147929 ~ 6148286 (-)
G148801 NA non-coding upstream 1733121 7140362 ~ 7140968 (-)
G148395 NA other downstream 55896 5338809 ~ 5342491 (-)
AMCG00000161 NA other downstream 321141 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 1839486 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4457552 890112 ~ 940835 (-)
G147324 NA other downstream 4912804 484720 ~ 485583 (-)
AMCG00000180 NA other upstream 596945 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 638424 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 743479 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 800273 6207514 ~ 6209957 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other upstream 806764 6214005 ~ 6216441 (-)

Expression


Co-expression Network