AMCG00000145


Basic Information

Item Value
gene id AMCG00000145
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5307190 ~ 5314953 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000145
CTCAGTTTACTTCCTGTGAAAGATAAACAAATGGAGCTAGAGGGACACAGCCGAGAAAATACTCAGAAATGTAACTTTATATGcggattaaaacaaacacaatgccCGGAAAGAAGAGAAAGTACAATTCAAGGTTTCCACCTGCACGTATTAAGAAAATCATGCAAAAAGATAAGGAAGTGGGGAAGGTCGCAGCTGCAGTGCCAGTTATTATATCAAGAGCCCTGGAGCTCTTTCTGAAGTCTCTCTTGACTAAGAGCTGTCAGATCACCCAGTCAAAGCACACCAGGACCATGACCCAAGCACATCTgaGACAGTGCATCGAAACAGACCGGCATTTTGAATTCTTGAGGGATCTTGTGGCCCGGTTTTCAGCTCTCCCACCTTCCCAGGAAGAGGGCTGTGCCAAGTGGGTGCAGTCTGCTCAAAGGAGAAGGTGGCAGGATGTGGGACTGAAAGGGAAGCAGTCTGGAGCACCAGAGAAAGCAGGGGGACACAAGGATGATTCTCTGGAAACTATTGAACAATCTGATGAGGATTCTGAGCCAGAGCTAATTTTCTGCCTTGAAAAGGACATCCATCTCCCCCACTCATCAATCAGAAAACGCTCCTTGAAAGTTACAGGCTTTCCCAGCAGCGTTCAGCTCCGGTCCTGTAGGAGAACAATGCCTTCTGGTTTTCACTCCACCTGAGCCCTCAGTTGCCTGGATGGATAAATGATCTGTTTAACCCTTATTCTGCTTATGATTTAAAGAGATTTTTACCACCATAGACCTTGATCTGTGCACTCAGTGCTCTACAAATGAAATGCCTGGTTTTGTAAGCCTTAAAGAGCTCCATGGCTTGAAACGTTCGTGAAGAGGAAAAACAGCATCTGCTTCTATTCTCATCCGGTACCTCTAGTTTAAGGTACCTTAAGCAGTGCAGAGAGCAGAGATGTGCTGATAAAAccagttatcttttttttttctatgaagTTTTATACTGATATCACTGTtgaacaattacaaattaattaatggaaatgTCTTACTTGTAACTTaagattttgtaaaaacaaataatgaagtaaaaaaagaaataaatggatagttaagttttaaatacatgtaccttatttgaaggattttttttttcccccacttgaTTTTTGTAATTGAATGAAACTGAATCAATGCAGACTGAGATGTTAAAGTACTTGAGTTTTGTCACAGGCTATTTTAGAGGGATCTGTATAAGCATATTGGATCccattttgtatttctgcaaaCTTTTGTTatcaattgattgattaaagtgttaccattaaGGCTGagatttaaagacatttttaagCACTCAAGCTCAAAAAGGTGAAACTCCTACTGTTACACATTGTGACAATGGGCTTTACCAAATCTCAAATGACAAACCTATTGGCACTTTCAATTGTCTACTACATAAGTAGTTACTTCGATATGTTACAAGTTTGCAATTGGTGATTCCTAGgtcagttacatttttgtttatttgctctaggcttaattttgtatattttggtcttgtatttattcataacaATTGAGtccttttaataatgtaattcaaaACAATTTGTACAGTTATAATTAACCTTATCAacataaaaagtatattataGTTCTGATTCCCTTCCTAAATTGTTTTACCATTTTATGGCAATTCAATTGATTTggccaaaatattttaatatctttaaagcaaaatattaatgacaaagcaattaacttttttttttattgctccTGGTTAATAATTTCCAACCTCAAAACAAtccaaaaactacaaaatacatgtgaaatttttaaatgtgtaacaaGTACTTTATACTATCTCAGCAAGGTAAAAGAACGGCTGTCGAAATGttgtaaatatgtaaagaaaTTGAAGTCTGAAAAGTTTGAATATGGAAGATGTAAATCCTTGTGAAGATTTTGTTTATGATTAGCATTGCTTTAGACGTGGtctcaaaatggaaaatatacatgaaataaaattaattttccaGAAAACATTTGCCTAAAGTACCTTGTCTTTCAATATACATCATTTCAGTGGGGAAATAACATCTTTCAAGTTCTAACTTTTAAACACACAAGTCTTAaactggaagagaaaaaaaagagaatcaatatttattgaaaGTAACAGATGAATATTTGCATACAAACAATGTTCCTGCAATtgaaaaggtaaataaat
>TU186722
aaaaagagaatcaatatttattgaaaGTAACAGATGAATATTTGCATACAAACAATGTTCCTGCAATtgaaaaggtaaataaataacagcaaagCCACTGCTCCACTCATACTTTCTACCATATCTATGTGACCAAATTGAAACGAAGCCATCACATGTTAAAGACATACTGCAAGTCCATGTGGTGCATTTAAACTATGTTGAACATGCATTAGTCTTAAATAAGCAACACACACTATGAAAACTATTAATGGTTTGCGGTACTTCTAACTGAAAgtagtacatttatttcaaaatatttctggTCAAATAGTCCCAATAAGTTCAGCAAACATTATAtgcctccccacccccctcagtTCAAACAGCATGGGGACTCAGTCTTCACTATAGACAGACATGCCAGTTGCAGACTCATTGGTGTGAGATGCCCAAACTGGAATCTTTCACTtctaaaacaaaactcaaaacgGTTCGATTACCATTAAAAAAACGTGTACTTAAACCTTGCATTGCTACAGAATCTTTACAACCCTTTTCTCCTTGTAGTATTGGTATGTGGGCACATCAATTATGGTTTCAAAACTCCATCCTTACTGGAGccacttacattatttacttaACACTTCTATTGGTCCGTTTGcaaacatttggaaaaagtACAAGGGAGATCagtaaaaatcacatttattaacGTTGGACATTTTAATGTGTACAGGATCAAACCAACAGAAAAGCCTAACATCTTTTCATGGTGGGATTTACCAGCAACAGAAAGGATTTAGTGGTTGGGCATGTctttttatctattttattttaggtataCACACAGTAAGCTCAGATTTACGACCCTTAAAACTTCATCTTCCTCCAAAAAGGCACAGTCCTTTCGTGGTTACCAGACAGCAGCTGGTGACGGAATAACTGTGCTAAAATGAAAGCGTTTACACACGAATGAACAGGTGACTGAAGCTTGTCTTGAGTtcataattcattattataacaGTACAGTGTCTTCAATAGAGCCGTGCGCCATAACCAAAAGTCTGTTTAATTCCCTCAAAGTAATAGCGCTGCCAGCCTTGTCTGGTCCGTTCCTCTTCACTCACTGGAACTCCTTTACACTCTACCTTGAGTTCAGTCTCGTGACTTCGGTTTATGAAATTAACCGTGATGGTTGCATAATGTTCtacaaagacaaacagaagATAGTGagctaaacacacacacaaaaaacagatccTATTGCAGATCCATTCCCATTCACAGTAATGAGAATACCATTTTGATGACATTCGTCTACTTGTCTGAGGATTATTCTGATCAGTCGCCCCTCAATTGCCTTGTACATGTAAAACCTACTAAAAGAgctattttatcatttttttgttgttgttttttattataattgttgccATTATTAGTTTTGGAAATCCTACATTTTGATTCTGTATTTAAGTTGCTTTGAGCTGCAATGAGCATGAATAAAGATGTTGAAACCCAGATCTCAGGACTTACCGCAGGGCCAGGTCTTATACCTCCATTTCATAActattttttcttctggaaAGATCTAGGAATTCGCCGCAGACGTTGCCCTCCATGAGCCGAAATTTCCCCCCTTTATCACCGTCTACGACAGCGGCGGAGTGGGTGAAAGCTTGCACCATCTGTGGACAAATGACATGAAACATCACATGGACAGATGCAATAGGTTGGCTGCTGCACTTAAATAAGACAGAACATGCATTCaatgggggaggtgggggggacaCGACTATTTGTCATGGGATATTAAGAAAACTGAGATTGGTGAAAATATTTTTGCCATACAGGCTGCAGGGTGCTTGAATGGCGTTACCTCCTGATTAAGAAAGATCCTGTAGAGCTCCTCCGGGGAGGTCAGGAAAGTCTCCTTCACAGTGAACTTGCAAGTGGGGATCTTCACTCCCGTATTAGGAGTCGTCGACGAGCCACCAGGAGCGAt

Function

GO: NA

KEGG:

id description
K21752 DRAP1, NC2-alpha; Dr1-associated corepressor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000145 True 2220 mRNA 0.35 7 5307190 5312961
TU186722 False 1987 lncRNA 0.40 2 5312878 5314953

Neighbor

gene id symbol gene type direction distance location
AMCG00000139 itpk1,LOC106597151 coding upstream 69903 5207350 ~ 5237287 (+)
AMCG00000137 NA coding upstream 135764 5170061 ~ 5171426 (+)
AMCG00000135 NA coding upstream 184960 5117082 ~ 5122230 (+)
AMCG00000159 unc79,LOC106586068 coding upstream 221243 4940648 ~ 5085947 (+)
AMCG00000133 NA coding upstream 372994 4931735 ~ 4934196 (+)
AMCG00000148 NA coding downstream 5392 5320345 ~ 5329033 (+)
AMCG00000152 NA coding downstream 25949 5340902 ~ 5373337 (+)
AMCG00000147 cdca4,LOC106599634,LOC106610950 coding downstream 60662 5375615 ~ 5380159 (+)
AMCG00000141 NA coding downstream 75372 5390325 ~ 5395773 (+)
AMCG00000143 NA coding downstream 148996 5463949 ~ 5470513 (+)
G148200 NA non-coding upstream 724639 4582311 ~ 4582551 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding upstream 1131474 4173437 ~ 4175716 (+)
G148143 NA non-coding upstream 1144879 4160855 ~ 4162311 (+)
G148119 NA non-coding upstream 1293787 4011654 ~ 4013403 (+)
G148075 NA non-coding upstream 1427669 3876371 ~ 3879521 (+)
G148396 NA non-coding downstream 38998 5353951 ~ 5354185 (+)
G148402 NA non-coding downstream 67615 5382568 ~ 5388814 (+)
G148452 NA non-coding downstream 225726 5540679 ~ 5544478 (+)
G148459 NA non-coding downstream 363030 5677983 ~ 5678620 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding downstream 400640 5715593 ~ 5719481 (+)
AMCG00000136 btbd7 other upstream 145995 5088439 ~ 5161195 (+)
AMCG00000113 NA other upstream 1114157 4112120 ~ 4193033 (+)
G148040 NA other upstream 1546566 3760179 ~ 3760624 (+)
AMCG00000093 srp14,LOC106610862 other upstream 1582874 3720985 ~ 3724316 (+)
AMCG00000094 NA other upstream 1608097 3690772 ~ 3699093 (+)
AMCG00000146 NA other downstream 19560 5334513 ~ 5340550 (+)
AMCG00000142 NA other downstream 120205 5435158 ~ 5454206 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 566070 5881023 ~ 5888027 (+)
AMCG00000175 NA other downstream 685958 6000911 ~ 6011397 (+)
AMCG00000201 NA other downstream 1154392 6469345 ~ 6474232 (+)

Expression


Co-expression Network