AMCG00000149 (LOC107721334,LOC107659197,LOC107585782,LOC104966051)


Basic Information

Item Value
gene id AMCG00000149
gene name LOC107721334,LOC107659197,LOC107585782,LOC104966051
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5293188 ~ 5306080 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000149
ATCTCAGATAACATTTTCTCATTGAAATTGAGTCTTCAGTGACGAACACGTAGACCTCCGTGACTAGCACTGCTTGGATACATGGATGAAAAACCGGAGTTTCACTGCTCGCGTTAACGTCTAAGATAACTTATTTGTTCAGTTATTATGTTCAGTTTCTGAACTGAATGGATTTTAACACATCTGCACAATTGTAAGGTCGTGAAAAGGATAACTACCACCGagtgattttttcccccctttttccTTCTATTTATgacaaagtgtttaaaatgacgGCTAAGATATGGCTTCTGTTTACGCTGTTGGTGGGAGTTTCATGTAGAGTGACAGCTGATGTGGAGGAGTTAAATGACACCCCTGAGGCCAAgTCATTCCACGATGCAGAGGATGAGGAGGTGCCCAGGGAGTCTCGGATTGTCGCCGGGCAGGTGCTGTTTCGCAGGGAAGAGGCTCACGAGGAAGAGGAGTTCGACAGACAGTCCGAGCCACACAGTCTGTCAGAGGGAGTGGAGATGGAAGACTTACCTTCTGAGCCTGTTCCTGTAGAAGACAAGCAGAAACAAGTGCCGCTCGTGATGGGGGGTACAGCGAGTGGGGAGCCCTGCCTCTTTCCCTTCCTGTTCCTGGGCACAGAATACTCCGAGTGCACCACTGAGGGCAGAGAAGATGGCCGTCTCTGGTGTGCCACCACCTACGACTATGAGCGAGACAAGAGATGGGGATTCTGTGAAACTGAGGAGCAGGCTAATCAGAGGCGACAGGCCCAGGAGGCGGAGGACCTATACCAGAAGGCCATCAAGATCATCAATGGGACGAGTAAGAAGAGTCAAAAGAAAGAGGAGTATAGCACGCTGATGAAAGTGGCTGAAATGGGCCACACCAAGGCCATGGAGAAGGTGGCCTATGCCATGCTTTTTGGAGATTACTTGAAACAGCAGATCCCGCAGGCAAAGGAAATGTTTGAGAAGCTGGTGGTGGAAGGATCACCCAAAGCTCAAACGGCGCTTGGTTTTCTTTATGCTGCTGGGTTAGGCGTGAACTCCAGTCAAGCCAAGGCCCTGGTCTACTACACATTTGGGGCTCTGGGAGGAAATCTGGTGGCCCACATGATTCTGGGTTACCGGTACTGGGGAGGTATAGGAGTCCCCCAGAGCTGTGAATCCGCCCTGACACACTATCGATTGGTGGCAAACCATGTGGCCAGTGATATCTCCCTGACGGGGGGCAGCGTGGTGCAGAGGATCCGCCTGCTGGACGAAGTGGAGAACCCTGGGGTGGCCACTGGGATGCTAGAGGAAGACCTCATTCAGTACTACCAGTTCTTGGCCGAGAAGGGGGATGTGCAAGCTCAGGTTGGTCTTGGACAGTTACACCTGCATGGTGGCCGTGGAGTTGAGCAGAATCATGAGaGGGCCTTTGACTACTTCAACCAAGCAGCCAATGCGGGAAATACCCATGCAATGGCCTTCCTGGGAAAGGGCAATCCAGTGGGGCAAAGTGGACTGGGAATGGCTTACCTGTATGGAAAGGGAGTTCCCGTGAATTATGACTTGGCCTTGAAGTATTTCCAGAAGGCAGCTGAACAAGGCTGGGTGGATGGACAGCTCCAGTTAGGGACCATGTACTACAATGGCATTGGAGTAAAAAGAGACTACAAGCAGGCCCTGAAGTATTTTAACCTTGCCTCACAAGCTGGGCACATCCTGGCATTCTACAACCTGGCCCAGATGCATGCCACGGGCACAGGAGTGATGAGGTCGTGCCACACAGCTGTGGAGCTGTTCAAGAATGTGTGTGAGCGTGGCCGTTGGTCAGAGAGGCTGATGGCGGCCTACAGCAGCTTCAAGGAGGGGGACTCTGACTCGGCTGTGGTTCAGTACTTGCTGCTGGCGGAGCAGGGCTACGAGGTGGCTCAGAGCAACGTGGCCTTCATCTTGGATCAGAcaGAAGAAGCGAAAATCTTCGGTGTCAATGAGACGTACCCCAGAGCCCTGCTGCACTGGAACCGCGCTGCTGCCCAGGGGTACACGGTGGCAAGGATCAAGCTGGGGGATTACCACTTTTATGGCTATGGCACGGATGTGGACTACGAGACGGCCCTGATCCACTACAGGCTGGCCTCGGAGCAGCAGCACAGTGCGCAGGCCATGTTCAACCTGGGCTACATGCACGAGAAAGGGCTGGGCATCAAGCAGGACATACATCTGGCTAAGCGCTTCTATGACATGGCAGCAGAGGCCAGTCCGGATGCCCAGGTCCCCGTGTTTCTTGCGCTGTGTAAACTGGGCCTGGTTTACTCCATGCAGTACCTACAGGAGCTCAATGTGAAGGAACTTTTTTCCCAGATTGACTTGGACCAGTTACTGGGGCCGGAGTGGGACCTGTACCTGATGACCATCATTGCTCTGCTCCTGGGCACGGTGATCGCCTACAGGCAGAGACAGCACCAGGCCCTGCCCAGACCCATGGCCCCACCACGGCCACCAGCAGAGCAGCCGGAGCCCCAGGCCGAGCAGCAGTGAgagccctgccctgccctcccTCTGTCACAGACTCCACTGGAACCGCCTGAGGACCCGCTGCCCGGCCCATAGACCCTTGCCCCTGCTGACCAGAAGGACTGCTTAGAAATAGAGACTTGGGtagacattttggagctgcctGGACTCTGGGGGGACGACATAAAAAGAAACTATAAACCCTGAGGTGTTCAGGATATACGATGTCTGTCAATACCAGCTGACAtcgctttattatttttattaaattctgTTTGGTATGCCGCGGATTTGACTCCCAAGTTGACTCCCAAGTTGACTTCTGATGGGGCCCTTTAGACTATTATGACTGGGGCGGAGGAGGAATTGACCTACAGCAGTTACACaagttatgtttttgttctgttttttctctgtttttattttattttttatttttttggggggtgcgAGATGTGAATCCAAATTCAGCCTTTCCGGTCCCTAGTCAGTTGCATTTCTAAAGATCTTTGCAAGCCATCTCATGTGGGAGTGTGGCGAGAGGCAAGGATGTCCAGCCGGGGTTTCACCCACAATGCTCTGCTCTGTtatctaaagcagtgctgcGGGGGAATCCCTCCTTCTCTGATGTATTAGACATAAGTTTGAAGACCTATCACCTATCcttgtttttaatctatatatttatatagaagaTCCGACtggttaattaatttatcattttttgtGAATACATTGTCTACATTGTAGCCTTAAGGAGAGAGGTTTGCCACTGTTAAAGAGGGAGAATAAAGGATTGGTTGTGCAGTGTTCAGACTTCACATTGTCAATGTTAAGACCAAGggctaaattaaaacataactttGACCCCCATGAAAATAGAAATCTATCAACCGTTGGTGGTTGAGTGTAGTGGGTCCAAAGTCTTGCTTTAATCTGGCCCCAAGTGTTTTTGAGAGTAACTGCTGGTTAGAGGAGAAGTTTAATTTAACTTCAGTAAACCATTCATTCTCAAGATCAGCCCCAAATCACAACGAAGTGgatgtttcatttatttgtctttctttgtgCTAGGAGTCTGTTCTTAAAACCAAATGGGGGGGGAAAATGTGTGACAGCAACCAGGAAGCACGTTTAGGTAGATGGCAAGACAAATGGTAACTTCTCAGCACAGAAAATGGCGACTACAACATACAGAGGATAAGACCGTGTGGGAGGTTGTCTTCCGTTTTTAATCCAAGGGTAGGGTTCTAGAAGGTGGGCATTATAATAATGCTTAACTGCATGTCTAGGCAAAACCATGGGGTCAAGCTTAGCAttgaaattgtttttgtaattcagCATcggctttgttttgtttcttttctgttgaaAAAGGAAGATAGAGGTTGGACACTTTGTGGGAGTAGTTCAGGTGGCATTCTGAATTCTCTGTGATCTTTTGGCAGACTGCTAGTTTTCCACTCTTAAAGTGTGGCCTTGCATTGCTTggaggatttttattttactgagcaataatgtattcacaaagaaggatttattattaataataataataataataataataataatattaaatctcTGCACTGTGCTATTTAGTGTTACTCAGAAAGTAGAATTGAGTGGATCTGCCCTCCCACCCTCCTTATATAagttctgtgctttaatttgagAGTCATTGATTGGGGCTAAAATAAAAgttccatttgttttattccccATATAGGAGAGAACCAGATTTGAAATGGGCTGTTTTAATGAGCATGATAGGCACAGCTACAGCTGACTATGAAAATAAGCATGTTGGCTTCAGCAGATCCGTACGTgggcatttttcatttttgtattttgctctgGAGTTTCCCTATGGGACACAGCCTGCTATGGATTTTTTCCAAAAGAATTGGGATCTTGAATTGAAATCCTTTTTCTTCATCCTCACTATTCCCAGAATTTCACTAAACTGTGCATTTGAGCAACCCTAATTAGTTTTAGGTAATCGGAGGTTTCGGGCATTCATTGGGAGATCAGTTACCATTGTCTGAACAAAGCTGTATCAGAAGAACTATAGGTTATAATTCCTATTTCtctgaatacaataaatgattATCTTGCCACGCCAGGTTTAAATGTTAACAGGTTATGCACCAACCCTGCTTTGGGTAATCTACATCTGGATGCTACAAAATCCAAACATAAATGATAAATCgataaatgataaatgtgtGGGAATGTAAGAGGTTGCACACATAAAACTGGCTTTTAACCCTTGCCCTTTTGTAACATTAGTACACTGCAATACAATAGAAGCTGCTTGAAAAAGCCATACCTGTTACAGTCTTGGTTATACCGTCAAATTCTACCTgatagtttctttatttttaaaaattctgAGACAACCCCAAAAGACAAAAGTATTTAATGATGGATACAATCTTTCCAAAGctcacattatatttaattgacaaATCATCTTTTAGTAGCAAACTGTCAGTCATGAATACACAGCTCACAAACTGCAATATTTCTTGTGAGGACTTGGGTTTGTTACCTTTAAAATctggtaaatacattttaagaaatttTACTCTTTCCAATTTATATACGATCAAGTATCTCCCACTGGGTACAAATGTTGCTTTGTTTATAACTTGTAATTTCTCCATGAAGTCGttgttttgcttcattttgattgaaatatataatgtacatcACATTCAGCTGTGCCATGTTTTTGAGTGAAGGCATTGGGGCTTCTTATAGGAgtccatttgtattttattaacactgctacagatacagaaaaaataGGTTTGTTATTTCATCTGTATGTAAAATAGCAATATAAAAGGTGTAATATAAATTGTCTGTACAAATTATTGTTAATAAGATGTAAAAACTCCATCATCTTTGGCTATTAAAACATGTAAGCTGTACtgtagaaaaaacaatacatcattTTCAGTGCTACATCTTTGTTAACTTCCTTTTGGGGAAATTACAAGATCAGGAAATGGTGTGATTAATCTTTCTTTATTGAAACACGGTGGGGGGGGGACATCATAGTTCATAGTTGCTTTttcaagagaaaataataataaaggtgaAGATTCAAAGAAATGCGCTTTACCCAGAActcttaaatgaaaaatgtgaaatggcTGGCTTATAAAAATGATAGATcttatttcattgtgttacttTGTGG

Function

NR:

description
PREDICTED: protein sel-1 homolog 1-like isoform X2

GO: NA

KEGG:

id description
K14026 SEL1, SEL1L; SEL1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000149 True 5712 mRNA 0.45 20 5293188 5306080

Neighbor

gene id symbol gene type direction distance location
AMCG00000150 NA coding downstream 7756 5274675 ~ 5285432 (-)
AMCG00000140 NA coding downstream 36800 5243028 ~ 5256388 (-)
AMCG00000138 NA coding downstream 118069 5159727 ~ 5175119 (-)
AMCG00000160 NA coding downstream 226363 5000865 ~ 5066825 (-)
AMCG00000134 NA coding downstream 399821 4892489 ~ 4893367 (-)
AMCG00000151 NA coding upstream 6403 5312483 ~ 5319529 (-)
AMCG00000144 NA coding upstream 92307 5398387 ~ 5407241 (-)
AMCG00000158 pcnx1 coding upstream 166081 5472161 ~ 5516402 (-)
AMCG00000156 med6,LOC102793293 coding upstream 215375 5521455 ~ 5528826 (-)
AMCG00000157 NA coding upstream 238749 5544829 ~ 5573070 (-)
G148364 NA non-coding downstream 52505 5236868 ~ 5240683 (-)
G148198 NA non-coding downstream 745128 4547824 ~ 4548060 (-)
G148181 NA non-coding downstream 1061860 4230642 ~ 4231328 (-)
G148041 NA non-coding downstream 1532571 3760302 ~ 3760617 (-)
G148011 NA non-coding downstream 1604957 3687963 ~ 3688231 (-)
G148400 cdca4 non-coding upstream 71669 5377749 ~ 5380128 (-)
G148416 NA non-coding upstream 144920 5451000 ~ 5454248 (-)
G148417 NA non-coding upstream 149166 5455246 ~ 5455489 (-)
G148486 NA non-coding upstream 404939 5711019 ~ 5711876 (-)
G148610 NA non-coding upstream 841849 6147929 ~ 6148286 (-)
AMCG00000161 NA other downstream 215942 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 1734287 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4352353 890112 ~ 940835 (-)
G147324 NA other downstream 4807605 484720 ~ 485583 (-)
AMCG00000037 erh,LOC100699790,LOC101174968 other downstream 4900706 387118 ~ 392482 (-)
G148395 NA other upstream 32729 5338809 ~ 5342491 (-)
AMCG00000180 NA other upstream 698106 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 739585 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 844640 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 901434 6207514 ~ 6209957 (-)

Expression


Co-expression Network