AMCG00000153 (slc8a3,LOC106953081,LOC107091425)


Basic Information

Item Value
gene id AMCG00000153
gene name slc8a3,LOC106953081,LOC107091425
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5658183 ~ 5659955 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000153
ATGGCGCGTGTAAGGCTGGTGAAGCCGGGGACATCCACCTTCCTCTGGTTGGGCCTCCTTGTTACAGCATTCCTATGTGCAGAGGCCAAGACCACCGAAAGCCcaacccccgccccccaaaaTGCGTCATGCGGAGGCACGTTCGAGTGCAAAGAGGGTATCATCTTGCCGATCTGGTACCCCGAGGACCCATCCTTGGGGGACAAGATAGCACGGGTCATAGTTTACTTTGTGGCGATGATCTACATGTTCCTGGGCGTCTCCATCATCGCTGATCGTTTCATGGCTGCCATAGAGGTCATCACCTCCCAGGAGAAAGAGATCCTCATCAAGAGGCCCAACGGAGAGACCACCACCACTACAATCCGTGTCTGGAACGAGACCGTCTCCAATCTCACCCTAATGGCTCTGGGTTCTTCAGCCCCGGAGATTTTGCTGTCGGTGATTGAGGTGTGTGGACATGGGTTCCATGCTGGAGAGCTGGGGCCCTCCACCATTGTGGGGAGTGCAGCCTTCAACATGTTCATCATCATCGCTATCTGCGTCTCTGTCATTCCCGAAGGTGAGACTCGCAAGATCAAACACTTGCGCGTCTTCTTTGTGACAGCTGCCTGGAGCATCTTTGCCTACATCTGGCTGTACATGATCTTGGCTGTCTTCTCGCCCAATGTGGTGCAGATCTGGGAAGGCCTGCTCACCCTGGCATTCTTTCCTATCTGTGTGATCCTGGCCTGGGTGGCTGACCGGCGACTGCTCTTCTACAAGCTAATGCGCAAGAAGTACCGTGCAGACAAGCACCGTGGCGTCATCATTGAGACGGAAGGTGAACGGCCAAAGGGCATTGAGATGGATGGAAAAATGGTCAACTCCCACTTTGTGGATGGCGGGGCTAGCAACCTCATCGGTCTGATGGACGGGAAGGAGGTGGATGAGTCACGGCGAGACATGATCCGCATCCTCAAAGACCTGAAGCAGAAGCACCCAGAAAAGGAGCTGGATCAGCTGGTGGAAATGGCCAACTACTATGCTCTCTCTCACCAGCAGAAGAGCCGAGCTTTTTACCGCATCCAGGCCACCCGTATGATGACGGGCGCCGGCAATATCCTGAAGAAACATGCAGCCGAGCAGGCCAAGAAGAGCACCAGCGTCCAAGAGGTGCGCATTGATGAGCCCGAGGAGTTTGTCTCCAAGCTCTACTTTGACCCATGTGCCTACCAGTGCCTGGAGAACTGTGGGGCAGCCATACTGACCATCGTGCGCAAGGGGGGCGACATCACCAAGACCGTCTACGTGGATTACAAGACAGAGGATGGCTCGGCAAATGCAGGGGCCGACTACGAGTTCACTGAAGGGACAACGGTCTTCAAGTCAGGTGAGACGCAGAAGGAGATCAGCATCGGCATCATCGATGACGACATCTTCGAGGAGGATGAGCACTTCTTTGTGCGGCTCAGCAACGTCCGTGTCCTGGAGACTGAGGAGCTGCTCTCCGCCAACAGCTTGCCCTACCCCAAGGCCATCCTGGGCCTTCCCGCGGTCGCAACTGTCACTATCCTGGACGACGACCACGCTGGCATCTTCACCTTCGAGACCGAGGCTATACACGTGAGCGAGAGTGTGGGTGTGATGGAGGTGAAGGTGCTGAGGACCTCGGGAGCACGCGGCACAGTCATAGTGCCGTACCGCACGGTGGAGGGGCTGGCCAGAGGGGGAGGCGAGGATTTTGAAGACACGTATGGGGAACTGGAATTCAGAAACGACGAGACCTGGTAG

Function

symbol description
slc8a3 Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in anterograde synaptic vesicle transport and vesicle-mediated transport. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Is expressed in brain; eye; ovary; and somite. Orthologous to human SLC8A3 (solute carrier family 8 member A3).

NR:

description
PREDICTED: sodium/calcium exchanger 3-like

GO: NA

KEGG:

id description
K05849 SLC8A, NCX; solute carrier family 8 (sodium/calcium exchanger)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000153 True 1773 mRNA 0.56 1 5658183 5659955

Neighbor

gene id symbol gene type direction distance location
AMCG00000154 NA coding downstream 37361 5585947 ~ 5620822 (-)
AMCG00000157 NA coding downstream 85113 5544829 ~ 5573070 (-)
AMCG00000156 med6,LOC102793293 coding downstream 129357 5521455 ~ 5528826 (-)
AMCG00000158 pcnx1 coding downstream 141781 5472161 ~ 5516402 (-)
AMCG00000144 NA coding downstream 250942 5398387 ~ 5407241 (-)
AMCG00000162 NA coding upstream 35800 5695755 ~ 5709603 (-)
AMCG00000163 actn1,LOC107705429,LOC107602958,LOC107739883 coding upstream 54915 5714870 ~ 5742038 (-)
AMCG00000171 dcaf5,LOC102780996 coding upstream 107583 5767538 ~ 5791438 (-)
AMCG00000172 NA coding upstream 131628 5791583 ~ 5822126 (-)
AMCG00000167 rtf1,LOC102785722 coding upstream 311825 5971780 ~ 5984573 (-)
G148417 NA non-coding downstream 202694 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 203935 5451000 ~ 5454248 (-)
G148400 cdca4 non-coding downstream 278055 5377749 ~ 5380128 (-)
G148364 NA non-coding downstream 417500 5236868 ~ 5240683 (-)
G148198 NA non-coding downstream 1110123 4547824 ~ 4548060 (-)
G148486 NA non-coding upstream 51064 5711019 ~ 5711876 (-)
G148610 NA non-coding upstream 487974 6147929 ~ 6148286 (-)
G148801 NA non-coding upstream 1480407 7140362 ~ 7140968 (-)
G148962 NA non-coding upstream 2098727 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 2296017 7955972 ~ 7956264 (-)
G148395 NA other downstream 315692 5338809 ~ 5342491 (-)
AMCG00000161 NA other downstream 580937 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 2099282 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4717348 890112 ~ 940835 (-)
G147324 NA other downstream 5172600 484720 ~ 485583 (-)
AMCG00000180 NA other upstream 344231 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 385710 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 490765 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 547559 6207514 ~ 6209957 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other upstream 554050 6214005 ~ 6216441 (-)

Expression


Co-expression Network