AMCG00000154


Basic Information

Item Value
gene id AMCG00000154
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5585947 ~ 5620822 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000154
ATGTCTTCATCCGTTTCATGGCAGAAGATGTCCGCTCGACAGATGGACACCATTTCCCTGTTCAAAACAATTCAGGTGAAAGTTATTGACGACGAGGAGTACgagaaaaacaagaacttcTTTCTGGAGCTGGCCGATCCTCGAATGGTGGACATGAGTTTGCAAAAAGAGGCCGCAGATAGGAAGTTGTCGGTGGAGGAGGAAGAAGCCAAGAGGATCGCCGAGATGGGAAAACCAATTCTAGGGGAGCACCCTAAGCTGGAGGTCATCATTGAGGAGTCCTATGAGTTCAAGAGCACGGTGGACAAGCTGATTAAGAAGACGAACCTGGCACTGGTAGTGGGAACGCACTCCTGGAGGGACCAGTTCATGGAGGCCATCACAGTCAGTGCAGACACCTTCGCCAGCAAGGTGGCCGCTGTGCAGGACACGTACGCCGACGCCTCCATCGGCAACGTGACGGGCAGTAACGCAGTCAATGTGTTCCTGGGCATCGGGCTGGCCTGGTCCGTGGCAGCCATCTACTGGTACATGCAGGGGAAGGATTTCGTGGTGCAGGCAGGCTCGCTGGCCTTCTCCGTCACCCTCTTCACCATCTTCGCCTTCCTGTGCATCACAGTGCTCCTTTATCGCCGCCGGGCACACATAGGAGGCGAGCTGGGCGGGCCTAGGAACCACAGACTCGCCACCTCCGGATTCTTTGTCAGCCTCTGGCTCCTTTACATCCTTTTCTCAGGGCTGGAGGCCTACTGTCATATACAGGGCTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000154 True 771 mRNA 0.55 5 5585947 5620822

Neighbor

gene id symbol gene type direction distance location
AMCG00000157 NA coding downstream 12877 5544829 ~ 5573070 (-)
AMCG00000156 med6,LOC102793293 coding downstream 57121 5521455 ~ 5528826 (-)
AMCG00000158 pcnx1 coding downstream 69545 5472161 ~ 5516402 (-)
AMCG00000144 NA coding downstream 178706 5398387 ~ 5407241 (-)
AMCG00000151 NA coding downstream 266418 5312483 ~ 5319529 (-)
AMCG00000153 slc8a3,LOC106953081,LOC107091425 coding upstream 37361 5658183 ~ 5659955 (-)
AMCG00000162 NA coding upstream 74933 5695755 ~ 5709603 (-)
AMCG00000163 actn1,LOC107705429,LOC107602958,LOC107739883 coding upstream 94048 5714870 ~ 5742038 (-)
AMCG00000171 dcaf5,LOC102780996 coding upstream 146716 5767538 ~ 5791438 (-)
AMCG00000172 NA coding upstream 170761 5791583 ~ 5822126 (-)
G148417 NA non-coding downstream 130458 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 131699 5451000 ~ 5454248 (-)
G148400 cdca4 non-coding downstream 205819 5377749 ~ 5380128 (-)
G148364 NA non-coding downstream 345264 5236868 ~ 5240683 (-)
G148198 NA non-coding downstream 1037887 4547824 ~ 4548060 (-)
G148486 NA non-coding upstream 90197 5711019 ~ 5711876 (-)
G148610 NA non-coding upstream 527107 6147929 ~ 6148286 (-)
G148801 NA non-coding upstream 1519540 7140362 ~ 7140968 (-)
G148962 NA non-coding upstream 2137860 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 2335150 7955972 ~ 7956264 (-)
G148395 NA other downstream 243456 5338809 ~ 5342491 (-)
AMCG00000161 NA other downstream 508701 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 2027046 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4645112 890112 ~ 940835 (-)
G147324 NA other downstream 5100364 484720 ~ 485583 (-)
AMCG00000180 NA other upstream 383364 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 424843 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 529898 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 586692 6207514 ~ 6209957 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other upstream 593183 6214005 ~ 6216441 (-)

Expression


Co-expression Network