AMCG00000155 (ttc9)


Basic Information

Item Value
gene id AMCG00000155
gene name ttc9
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5532610 ~ 5535596 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000155
ATGAGTCAAACCCGAGCAGGACAGGACGGCAATCCCGGGAGAGCAGACAGTGGTGGCACGaccggcggcggcggcggcggaggaggaggaggaggagtccCTCGCCCGCAGCTCCATCACAGCCACCCGCAAAGTGGCCGGAGCAGAGACCTGCGCCCCCAGCACGGGCGGCACGGCGGGCCGGCCGGCGTGCGGCAACCGAGCCACTCGGAGCCGGCCGACCTGCTGCGGAGAGCGCTGGACTTCAAGACGGAAGGCACCCAGTGCTACAAAGACAAGAAATACCGGGAGGCGATCGGCAAGTACCACCGAGCGCTGCTGGAGATGAAGGGGATCTGCCGGCTGCTCGGGGACCCCGATGCCAGCTCCAAGTCGCCATCGTCCGCGCTGCCCACGGCGGCCAAGTCCGCCCTGACGGATGAGGAGAAAGGGGCTGTGGAGAACGCCGAGCTGGAGTGCTACAACAGCCTGGCAGCTTGCCTGTTGCAGATGGAGCTGGTTAACTACGAGAGGGTGAAGGAGTACTGTCTGAAGGTGCTGCGGAAGGAGGGAGAAAACTTCAAGGCCCTGTATCGGTCAGGAGTGGCCTACTACCACCTGGGGGACTTCCACAAGGCCCTGCACTATCTGAAGGAGTCTCACAAGCAGCAGCCTTCAGACACCAATGTTATCCGCTACATTCAGCTGACGGAGATGAAACTCCGCCGCAGCTCTCAGAGGGAGAAGGAGGCCTCGTAA

Function

symbol description
ttc9 Predicted to act upstream of or within bone development.

NR:

description
PREDICTED: tetratricopeptide repeat protein 9A, partial

GO: NA

KEGG:

id description
K24930 TTC9; tetratricopeptide repeat protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000155 True 738 mRNA 0.64 3 5532610 5535596

Neighbor

gene id symbol gene type direction distance location
AMCG00000143 NA coding upstream 62097 5463949 ~ 5470513 (+)
AMCG00000141 NA coding upstream 136837 5390325 ~ 5395773 (+)
AMCG00000147 cdca4,LOC106599634,LOC106610950 coding upstream 152451 5375615 ~ 5380159 (+)
AMCG00000152 NA coding upstream 159273 5340902 ~ 5373337 (+)
AMCG00000148 NA coding upstream 203577 5320345 ~ 5329033 (+)
AMCG00000170 NA coding downstream 299890 5835486 ~ 5844974 (+)
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding downstream 334642 5870238 ~ 5874652 (+)
AMCG00000165 NA coding downstream 403869 5939465 ~ 5967106 (+)
AMCG00000173 NA coding downstream 448963 5984559 ~ 5993668 (+)
AMCG00000174 NA coding downstream 495693 6031289 ~ 6034264 (+)
G148402 NA non-coding upstream 143796 5382568 ~ 5388814 (+)
G148396 NA non-coding upstream 178425 5353951 ~ 5354185 (+)
G148200 NA non-coding upstream 950059 4582311 ~ 4582551 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding upstream 1356894 4173437 ~ 4175716 (+)
G148143 NA non-coding upstream 1370299 4160855 ~ 4162311 (+)
G148452 NA non-coding downstream 5083 5540679 ~ 5544478 (+)
G148459 NA non-coding downstream 142387 5677983 ~ 5678620 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding downstream 179997 5715593 ~ 5719481 (+)
G148519 NA non-coding downstream 316049 5851645 ~ 6045324 (+)
G148545 chp1 non-coding downstream 482447 6018043 ~ 6029777 (+)
AMCG00000142 NA other upstream 78404 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 192060 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 217657 5307190 ~ 5314953 (+)
AMCG00000136 btbd7 other upstream 371415 5088439 ~ 5161195 (+)
AMCG00000113 NA other upstream 1339577 4112120 ~ 4193033 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 345427 5881023 ~ 5888027 (+)
AMCG00000175 NA other downstream 465315 6000911 ~ 6011397 (+)
AMCG00000201 NA other downstream 933749 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 965297 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1755070 7290666 ~ 7296965 (+)

Expression


Co-expression Network