AMCG00000156 (med6,LOC102793293)


Basic Information

Item Value
gene id AMCG00000156
gene name med6,LOC102793293
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5521455 ~ 5528826 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000156
CCCACAGACGTCATATTCCTTCGACgagaaaaaatgaaacaaaatcatcTCTATGCGACGAATATTTAACTTCCAAGATGGCGTCCGTGGATTTAAGAGATAATCTTCTGGGAATATCATGGGTGGACAGTGGCTGGGTGCCAATCTTGAACCCTGGCAATGTGCTTGATTACTTCTCCGAGAGAAGTAACCCCTTCTACGATAGGGCGTGCAACAATGAGATGGTGAAAATGCAGAGGCTCACTCTGGACCATATGAAATTTAACAATTCGCACACGCAAGTCGTCCCACTGGCTGATTTTTACATCATCGCAGGGGTGGTGTATCAAGCTCCTGATCTGGGCTCCGTCATCGGCTCCAGGGTGCTGTCTGCAGTCCATGGGGTCCAGTCTGCATTTGATGAAGCCATGTCCTACTGCCGCTATCATCCCTCGAAAGGTTACTGGTGGCACTTCAAAGATCAGGATGAAAGAGaaaaaacaaagccTAAGTCGAAGAAGAAGGAAGAGCCCAGCTCACTTTTTCAGCGACAGAGAGTAGACACCCTGCTGCTGGATCTCAGGCAGAAATTCCCTCCAGCCTTCTACCAGccaAAAGCTGGAGAAAAGCCTATTCCAGTGGAAGTGAAGAAGGAGCCGGAGCCACCAGCTGAAGCAGTGAAGCAGGAAGAGAGGGAACCAGCCAAGAATCCGGCACCAGCTGCTCCTAGTAAGGCCCCTCCAGAGAAACGGGCACGACTGCAGTGATGCccccttcacacacactcacacactccgATAATCACAGTTCTGATCAGTGAGACACGTTCACAAGGTGTTCTCCAGGCACTGCTGATGGGAATggcttttatttgatatatttaaaagaaccaTGGATTTGGATTGACTGAACAAAGAGCAGTGTTGCACAGACAAAGACATAAATCAAGGCATGGCAAGAATTAGGAACCAAGCAACGGAAACGGTGCCTTCTGTGAGAACTCCCAGACTGCTCTGAGACGTGCCAGGCCCTCACTGGGGTGCTAGCAGGTGCTGCTCTTTTCAAGCCCAGAGGGTGATTGTGTGCACAGCCTGGACTGGATCTGTGCAGGATTTACATAACAACTTCCCCTTCTCCACGCTCTGGCAATGCGAATGCTTGAAAGGAATCAAGCATTTCATACGTGACCGAAATGGATGTCGACATTGCAAGCAGAGCGTCAACCCATCGCCGAtttttggaaagaaagaaaagtgccTAACGCCATTTTAGAAGTGTGGAAGAGGCATTCCgaataaagtttatttaattctgtaacTGTATCCGGAGATGTATGCATAGAATCCTAATTTAGGACCTCAGCAATTGTGGCTGTAGATTTCAAATCATGGTACACTTTGGCGTCTGTTTAAACGCACTCAATATTGGATTGGGTTTAACATGCTCATATGTAACCTTCCCCAGAAGATCTTTTGTAGCAGAATGGACAATAAAATCAGAATTCAACTATTTTTTGGTGTAAACTATTTTACCTTAAACCCTGAACATGTAAGTTATGTCTGACAATTGCAAAGTATACTTGGCACTGCAGCTTTTCAGCTCTAAACAAGTGTGTTGCAACATAAAAAGATTTGAAATGGCAACCCTTGGGAATAAGGtgcacaatattattattactggttAGACAGATCTGTTTGTATCTGGACATCAACTGCCGATAGTGATTACTTTATTTCATCATTTGTGTTCTGTTATTGAAGTATGCTTGCAGATTCCAGTCTTTTGATGTTTCATTGGGTGTTATTAGTTATGACAGTGCTTGGGCTTCCTTTGAAGGAAGCATCTCTACTCTGCAAATAGAAACATGTCTTGTGGAATCTGGGTTTTGAACGAGTGCATTGCTTACTTCCCCAGAGATCGGAGAACTGAGAGCACAATGGTCTTTTTGACAAGCTTCTCATATCTGTGTCCTGAAATTGTCCCTGATCCTAGTTTAGTTGTATAATTGTGAGCTCAGTTGGATTGGAACTGAAGACCCCTTAACTGACTAGGACCAGGGTTTGCAACAATTGTAAATCGACGCCTATCTTAGGAAACTATGGGATCCCCTGACACGGTTGATGCACCCCTTTTAGCTATGTTACATTTCAGTGCAAATCAAGCAGGCTAGATATTCTTTTTGCCAGTCTGCAGAAAGGGCACTCTTTGGTTGCAGTGGGCTAATCAAATATTAAGGGAAaatttgatgtttttgtattttttttccatcaatgtgtttttttgctaGACAGTATTTTTCTAATGTGATTTCTGGGAAGAAAATGTTCTGCTGTGCCCTTGAGAATGCATTGCGTCAATAAATGGAAGCTAGTTTAAAAGGGCTGCAAAATGATTTGGCCTCTCAGGGTTTTCATGAGAGCTCAAAAGTTTTCAGTATGAAagagtttatttgatttgattattaaaataaaattgggaTTATTGCATCTGCAAGCTCTACCTGGTAGGACCTCACCCACATGAACACGTGCAGTGGTGTGAAAAGGATGAGAAGTTCACAACTGAGACATTAATTGTCATTGCATGTTTTGATGTATATTCATAAGAATAATTTGGGGGTCAGATTAAGTTTCTAGAAtataatttgtctttttgtttttgcttcttttccctacatttgcttttttttttttaatgaatcccACTACTGCAAAGAAACTTAGTTTTCAAATTGGAAGGGACAAAAATATTAACGCTAAAATCTGATTcaataaatcttaaatgtaaatactttcTGTATAGGcctattttgttgtttttctt

Function

symbol description
med6 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED6 (mediator complex subunit 6).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 6

GO: NA

KEGG:

id description
K15128 MED6; mediator of RNA polymerase II transcription subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000156 True 2802 mRNA 0.42 8 5521455 5528826

Neighbor

gene id symbol gene type direction distance location
AMCG00000158 pcnx1 coding downstream 5053 5472161 ~ 5516402 (-)
AMCG00000144 NA coding downstream 114214 5398387 ~ 5407241 (-)
AMCG00000151 NA coding downstream 201926 5312483 ~ 5319529 (-)
AMCG00000149 LOC107721334,LOC107659197,LOC107585782,LOC104966051 coding downstream 215375 5293188 ~ 5306080 (-)
AMCG00000150 NA coding downstream 236023 5274675 ~ 5285432 (-)
AMCG00000157 NA coding upstream 16003 5544829 ~ 5573070 (-)
AMCG00000154 NA coding upstream 57121 5585947 ~ 5620822 (-)
AMCG00000153 slc8a3,LOC106953081,LOC107091425 coding upstream 129357 5658183 ~ 5659955 (-)
AMCG00000162 NA coding upstream 166929 5695755 ~ 5709603 (-)
AMCG00000163 actn1,LOC107705429,LOC107602958,LOC107739883 coding upstream 186044 5714870 ~ 5742038 (-)
G148417 NA non-coding downstream 65966 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 67207 5451000 ~ 5454248 (-)
G148400 cdca4 non-coding downstream 141327 5377749 ~ 5380128 (-)
G148364 NA non-coding downstream 280772 5236868 ~ 5240683 (-)
G148198 NA non-coding downstream 973395 4547824 ~ 4548060 (-)
G148486 NA non-coding upstream 182193 5711019 ~ 5711876 (-)
G148610 NA non-coding upstream 619103 6147929 ~ 6148286 (-)
G148801 NA non-coding upstream 1611536 7140362 ~ 7140968 (-)
G148962 NA non-coding upstream 2229856 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 2427146 7955972 ~ 7956264 (-)
G148395 NA other downstream 178964 5338809 ~ 5342491 (-)
AMCG00000161 NA other downstream 444209 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 1962554 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 4580620 890112 ~ 940835 (-)
G147324 NA other downstream 5035872 484720 ~ 485583 (-)
AMCG00000180 NA other upstream 475360 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 516839 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 621894 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 678688 6207514 ~ 6209957 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other upstream 685179 6214005 ~ 6216441 (-)

Expression


Co-expression Network