AMCG00000174


Basic Information

Item Value
gene id AMCG00000174
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6031289 ~ 6034264 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000174
GAACAAGTTGTAGGTAGCTGGAAACCTCACAAACGGAGAGGACCCATTTCAGCTGAGTACACCAGCCCTGGTCCAAAATATGCCCTTCCAGTACTGATAGGAACTGTCAATCATGCTACCACAAAATCCATGGCCCCTGCCTACAGCTTAGGAGTCAAACACCGTCCGACAGAGAACACCTTTTCCCCAGGTCCTGTTCACCTTGTCCCAGCTAACATGACAGAGAAGGGAAAGGAGCACATTCCAGCATACTCGATCGTCGGCCGTCCAAAAGAACACGTCACCCTCCCGACTCCAGGGCCAGGTTACTATGAGCCTGAAAAGCACCTGACATCTGTATGTCCTCATACCCCTGCCTACTCCATCTCTGGATGGGACAAACCATGTCTCATTGACCAAACACCggAGATGGATGGGAAGACCGGAACAACAATGTCAGGCAGGAGCCAGATTGGCAGCATCTATGACAATCTTCAGAAgAGTCCAGGCCCTGCAGTACACAGTGCGGTTGACCCCATTATCTACAAGTACAGCTCTCGTCACTACACAATGACTGGACGGAATTACATGCCAGAAAACAAGACACAGAAACCAGGCCCAGGAGCTCACTACCCTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000174 True 618 mRNA 0.51 5 6031289 6034264

Neighbor

gene id symbol gene type direction distance location
AMCG00000173 NA coding upstream 37621 5984559 ~ 5993668 (+)
AMCG00000165 NA coding upstream 64183 5939465 ~ 5967106 (+)
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding upstream 156637 5870238 ~ 5874652 (+)
AMCG00000170 NA coding upstream 186315 5835486 ~ 5844974 (+)
AMCG00000155 ttc9 coding upstream 495693 5532610 ~ 5535596 (+)
AMCG00000186 dnajc17 coding downstream 64229 6098493 ~ 6109137 (+)
AMCG00000185 NA coding downstream 123530 6157794 ~ 6170088 (+)
AMCG00000183 NA coding downstream 245284 6279548 ~ 6283057 (+)
AMCG00000181 NA coding downstream 322864 6357128 ~ 6364974 (+)
AMCG00000202 actc1a,actc1,act2,LOC105024319,LOC100194557 coding downstream 523578 6557842 ~ 6562820 (+)
G148545 chp1 non-coding upstream 1512 6018043 ~ 6029777 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding upstream 311808 5715593 ~ 5719481 (+)
G148459 NA non-coding upstream 352669 5677983 ~ 5678620 (+)
G148452 NA non-coding upstream 486811 5540679 ~ 5544478 (+)
G148402 NA non-coding upstream 642475 5382568 ~ 5388814 (+)
G148609 NA non-coding downstream 113658 6147922 ~ 6148285 (+)
G148618 LOC107745367 non-coding downstream 173089 6207353 ~ 6214760 (+)
G148631 cyp1c1,cyp1c2,cyp1c3,LOC106610849 non-coding downstream 181492 6215756 ~ 6216459 (+)
G148656 NA non-coding downstream 272364 6306628 ~ 6306867 (+)
G148764 NA non-coding downstream 889030 6923294 ~ 6927254 (+)
AMCG00000175 NA other upstream 19892 6000911 ~ 6011397 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other upstream 143262 5881023 ~ 5888027 (+)
AMCG00000142 NA other upstream 577083 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 690739 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 716336 5307190 ~ 5314953 (+)
AMCG00000201 NA other downstream 435081 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 466629 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1256402 7290666 ~ 7296965 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other downstream 1279608 7313872 ~ 7324451 (+)
AMCG00000217 gpx2 other downstream 1325014 7359278 ~ 7362707 (+)

Expression


Co-expression Network