AMCG00000176 (chp1)


Basic Information

Item Value
gene id AMCG00000176
gene name chp1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6017546 ~ 6029796 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000176
TGTTGTTATTTCCTAGATCCCACAATGCTTTGCACAAGGCACCGCGGAAACGGGGTATTTTCACATGATTTTGTCGCAATCGCAGAACCACGGTGACACAAGATCTGGTGTTATTGCTCCTCGAACAGTGCCTGGGCAGCATGATTGAATAAAGGCACGTCGTCACTTCCCCACATGATTTCTTCAACCTGTACCTGGACCCAATAGCAAGAGACCGGGGAGGTGCTTTCTTGGTGTGCTAGCAATGATAATAATAGGTGATAAACGACACTGCTCGTTTTGTAGAGGAGTGTAGGAGTACTGTGCGCCCAAACCGGTGGCTGTTGTAGACTTGTATTTCACGTTAGAGACATTCCTGCAGAAGAACCACAGAGCTGGTAGTCATTGCGCTGAAGGCTTCCGAGGCAGATATCGAGACATTTAAATAGTGAAAATGGGATCCAGAGCTTCGTCGTTGCTGCGGGAGGAAGAGATTGAGGAAATAAAGAAGGAGACCGGCTTTTCTCACAGTCAGATCACACGGCTGTACAGTCGGTTTACCAGTCTGGACAAGGGGGAGAACGGCACACTAAGCCGGGAAGATTTCCAAAGAATACCAGAGCTTGCCATTAACCCCCTGGGAGACCGAATCATCAACGCCTTCTTTCCTGAGGGagaGGACCAAGTCAATTTCCGGGGCTTCATGCGAACCCTGGCTCACTTCCGCCCCATTGAAGACCACGAGAAGAGCAAAGATCCTGAGGCCACAGAGCCCCTCAACAGCAGAAACAACAAACTGCTTTTTGCATTTCGGCTTTATGACCTGGACAGAGATGACAAGATTTCCCGAGATGAGCTCTTACAGGTGCTGCGCATGATGGTTGGTGTCAACATCTCGGACGAGCAGCTAGGCAGCATCGCGGACCGGACCATCCAAGAAGCGGATCAGAACGGAGACCGATGCATCTCGTTCTCCGAGTTCATAAAGGTACTAGAAAAGGTGGATGTAGAGCAGAAAATGAGTATCCGCTTCCTGCATTAAGAGCCATGTGACCTGAGTTTTGCCATCACCACCTAAAGAAGGATCAAATGCCATCTTCTGTACTGTGCTCTGGATTGTGAACAGTAGATCTTACTGTGCACGCGTGCTGACCAAGAAATTAATCAATGgatcatctttgtttttttgtgggcTACCTGCCTTGGACTGTTCTGTGAAACAAAGGGAATTTGTGTGCCTTGGTATGTGTATACCATGATCTCTATGTGTTTTCTTTAGGAAGGATTAGAAATATACTTGAGCATGCCTGAAAATGCCAATGACGGTAACCTAGCTATCACCTTAGATCAAAGTGTCATGGCATTGCAGTAGCAGTTTTATCTACAGCTTTTCACCTTGTAAACAAATTCTGTaattacacagtttaaaaaagcaacaaaacaaatatttgaatgacCGTGTCTTTATTTATGATGCTGATGGCATTTCCCCTCTGCTCAGCTCTCTCTGTGTATTCCCGGCCAGACGcacattgaaattatatattctaAAGCCAAACAGaagtaattgtttaaaaaataaaataaaatactacctATAATTCCATTATGGTTTAAGTTACGGAGACGGATCAATTGCCCCCATTACAATGAAGGGGACAGCGCTGTCTATAGACTAGATCAGCAGTTGGTTAATATCCTTGTGGGTTCCTAATTTTCTGTATTCCGTGTGTCTTACTATGAATGTCAATCAATTATAATTACTACAATGTCAAATAGAATCCCTTGTGCCTATGATAAAATCATATCGCTGTAGCTGCAGATAATTATGGAGAGCCTCACTTTTGAAGTGTTACTGAAGGCATTCCTTTTGCTTTCTGTCAGCCAAGGTGGGACCTGTTCTTGTTTTCAATTGGGCAGATTCAATTCTGGTTCAGGGTCTTGCCTTTGAGCTCTAGTGCCACAGCCTGTCTTAGCACCAAACCGTGTCTATATTATTttggtacattttttttcatcagtTAAGCAGTTTAGAAAAGCACCTTGGTAGTGTATTTTCGTATCgcttgattttgtttaaaatcaaaacaaacgcAAACTAATCGCAAAGCACCGAGATTGCAGTTAAATCCCAGTCACATTTCATAAAGTCCACCTGTATCTCACTATCCGGTGTGCCACTCAGCTCATtgatactattttatttatttattttcttttaactcGTCTGGCAAGTTCTTTCTTGTTTTAGTGCTGTGTTGGAAGCGGTCTGAAGTGGCCCCATCAAGAATCCTAATGGGCTGACCAATCACAAGTCaaatcagattttgttttcaattgaaTTCCATTTAAAGGTAGTTCCTGATCAGCACAGCTGTAAGACACACaggttgtgtttatttctggCACTGCCCACAGCAGACATACCCATTATACAGGATAAAAGAACCTGAAGTGCATTGTGATTTAATCGGTTGCTGTGCAAAACTTGTTTTGCtgtaactgtaaatgtaattggaGCCTTGTCATTGTTAAGAATGTTATGTATATGGTTTATTGTATTTGCTTATTAGTTTCAGGTACTTTAAAAGGGGCCTTAATGATTTggtgttggttttgtttcagtatgtGAATATACTGAAAGGAACAATTAAAACCTGACGTGTGTGCACAGAACAGCAGAAAATTGTGATTGTCTAAATTGTGGATagggaatattttttttgtagtctGCTATTGCTGCTGTTGAatattctttttaattgaaaaagcatTATTTAAGAGTTGTCAATCAAAACAATTCGAGGAATATCAAATGGTACAGAGGTAATTTAATTGCGCACACAatctgtttcacaaaataaaatccaaatgtatagtttccattaaaataaagatgtgaAGTACCATGCTTGCacattaaaatgttgcattattggctgtttgtttgttcttttaccCAATGGAACagttaatgtacaatattttgctCAGAATTCCTGTGCTAGTTTGACATGGTTTGGAAGacacttcattttaatatgacttATAGTGTTTCTCACAATGGTAAAGCATGAACTCAAAATCTTTATACACACAATTAAAGGTCTATGTACTTTGTTTTAGTTCTTAAGCAGAGATCTTCatgtttttacctttttaaaagcagtaaGACCTCCTTTATTCTTCATACTTTCACACTTGCTGAAATTACTGATATAAACCGCACAGGCCAGCTGTATGGGTGGCGTGGTGGTTAGCGCTGTTGCCTCACGGCTCCAGCCTCTTGGCTAGGGGGTGCGTGTctatgtggagtttgcatgttcttcccctgtctgtgtgggttttcaccaggcactctggtttcctcccactgtccagaGCCATGctggttaggttgattggtctctctaaattgccgtgtgt

Function

symbol description
chp1 Predicted to enable calcium ion binding activity. Is expressed in pronephric duct and pronephros. Human ortholog(s) of this gene implicated in spastic ataxia. Orthologous to human CHP1 (calcineurin like EF-hand protein 1).

NR:

description
PREDICTED: calcineurin B homologous protein 1 isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17610 CHP, CHP1; calcineurin B homologous protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000176 True 3405 mRNA 0.41 7 6017546 6029796

Neighbor

gene id symbol gene type direction distance location
AMCG00000178 NA coding downstream 16884 5992473 ~ 6000662 (-)
AMCG00000167 rtf1,LOC102785722 coding downstream 32973 5971780 ~ 5984573 (-)
AMCG00000172 NA coding downstream 195420 5791583 ~ 5822126 (-)
AMCG00000171 dcaf5,LOC102780996 coding downstream 226108 5767538 ~ 5791438 (-)
AMCG00000163 actn1,LOC107705429,LOC107602958,LOC107739883 coding downstream 275508 5714870 ~ 5742038 (-)
AMCG00000179 inf2 coding upstream 37859 6067655 ~ 6069832 (-)
AMCG00000169 NA coding upstream 95998 6125794 ~ 6126360 (-)
AMCG00000188 rad51 coding upstream 214923 6244719 ~ 6258200 (-)
AMCG00000187 NA coding upstream 230824 6260620 ~ 6279544 (-)
AMCG00000191 NA coding upstream 255213 6285009 ~ 6288346 (-)
G148486 NA non-coding downstream 305670 5711019 ~ 5711876 (-)
G148417 NA non-coding downstream 562057 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 563298 5451000 ~ 5454248 (-)
G148400 cdca4 non-coding downstream 637418 5377749 ~ 5380128 (-)
G148364 NA non-coding downstream 776863 5236868 ~ 5240683 (-)
G148610 NA non-coding upstream 118133 6147929 ~ 6148286 (-)
G148801 NA non-coding upstream 1110566 7140362 ~ 7140968 (-)
G148962 NA non-coding upstream 1728886 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 1926176 7955972 ~ 7956264 (-)
G149030 NA non-coding upstream 2274023 8303819 ~ 8304215 (-)
AMCG00000180 NA other downstream 4909 6004186 ~ 6012637 (-)
G148395 NA other downstream 675055 5338809 ~ 5342491 (-)
AMCG00000161 NA other downstream 940300 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 2458645 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 5076711 890112 ~ 940835 (-)
AMCG00000177 NA other upstream 15869 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 120924 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 177718 6207514 ~ 6209957 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other upstream 184209 6214005 ~ 6216441 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other upstream 526909 6556705 ~ 6563305 (-)

Expression


Co-expression Network