AMCG00000178


Basic Information

Item Value
gene id AMCG00000178
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5992473 ~ 6000662 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000178
ATGGATTTGGATTGCATGAAATACGCCGAACTGCGACGCCTGGCAAAGGATGTCGGGCTGAAAGCTAATATgaaggctGAAAAGCTTCTGAAAGCCCTAAAGGAGCATTTCAAGGAACAGGAGAAGAGTGTCTCCACAGCTGGTGAGGTGGCTGATGGCAGCACAGACACTGTATCTAGCGATGAGCCGAATGCCAGTCAGGATCCTCCGCTCCCTAATGGTACACCCTTTGTCACCAAACGACGTGGACGAGGGAAACGCTCTCCAAAGAGAAAGCATGGGGAGACGGACAGTGATGAGGgagtagcagcagcagcgcagGCCCCGGATCAGgaAACTGCAAAGCCTAAAAGACGGAGCAATGCCAAGAAGAGAAGACTGTCCCACGAGGAGGGAGATGGCCGTGCAGAGGCGAAGGAGGAGCCCACAGCCGCTCCTCCGGCAGAGGATACTGACAATACAGAGAGTCAGGCCACTGCTACAGAAGGGTtgatgaagaaagaaaataaagGAAAATGCCAGACTGCAGCACTGCCTCCTGGGAAGATCCCTCGTCATGAGGGGCTGCTGAAGAGGACGGGGAAACTTGTGCTGAAGCCTGTTACACCAAATTTCAAGAAAATCCACGAGGTGCATTTTAGGAAAATGGAGTCCATCGATACCTACGTGCAACGGAAGAATAAGAAGAGGGAGTCGTACAATAACTCGGTGAAAGAAGTAAAGatcCTGTCGGAGAAGGCCAACATCATAAAACCGTCAAATAACAGGACTTCCAGCAAGGTGGTCGTGTGTAGACTGCTGGGGGCAGACAGTCAAAATGGTTTCCAAAATGAAATGATTTGGACCAAACATGCTTGTAATTTTCAGAAACCCAGTCAAAGCCGAGGCACCCTGTTCAGTCCCAAATCTCAGGAGCGAAGACATACAATCAACACTCCCTCTGCCCAGAGCAGGCCTGCAGTGAGGGACAGCACTGCCTTCAAACCTACTGTTCTCTCAACAAGGAGAGTTAATGTCAGGTTCTCAGAGGCCACCAAGGACAATGAGCACAAGCGCTCCCTGGTGAAGACCCCTGCCCGCATGTCCCCCTACACTGAGGTGTCCCGTACCCCAGGGACTGGCCCGACCAAACGGCCAAGGTCTGCCACAGGAGTCCCTTCCACAAACCCCAAAGTCCAAGtgacgacaccattcattttcaaagcagACCCCAATACCAGCAGTGTTGGTACTCCAGGGACTAAcaagaaaaatgcttttgatttgAAGGCCAGTCTGGCTCGTCCGCTTGGCTACCAGCCACACAAAGGGAAACTGAAGCCATTCGGATCGACTCAAGAAAATGAAGCTTTGAACAAATCCCAGACAACTTCCTCGCAccaaacaaactacaaacaacATAAAGTTCAGACGAGgGAAGTGAGGCGCACCAAGCACACCGAAGACAGGAAGCAGAAGAAAGAGAAACTGCTTGGAGCCAGACGAGGCCTCGTTATGAACTAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0001755 neural crest cell migration biological_process
GO:0051301 cell division biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000178 True 1503 mRNA 0.51 12 5992473 6000662

Neighbor

gene id symbol gene type direction distance location
AMCG00000167 rtf1,LOC102785722 coding downstream 7900 5971780 ~ 5984573 (-)
AMCG00000172 NA coding downstream 170347 5791583 ~ 5822126 (-)
AMCG00000171 dcaf5,LOC102780996 coding downstream 201035 5767538 ~ 5791438 (-)
AMCG00000163 actn1,LOC107705429,LOC107602958,LOC107739883 coding downstream 250435 5714870 ~ 5742038 (-)
AMCG00000162 NA coding downstream 282870 5695755 ~ 5709603 (-)
AMCG00000176 chp1 coding upstream 16884 6017546 ~ 6029796 (-)
AMCG00000179 inf2 coding upstream 66993 6067655 ~ 6069832 (-)
AMCG00000169 NA coding upstream 125132 6125794 ~ 6126360 (-)
AMCG00000188 rad51 coding upstream 244057 6244719 ~ 6258200 (-)
AMCG00000187 NA coding upstream 259958 6260620 ~ 6279544 (-)
G148486 NA non-coding downstream 280597 5711019 ~ 5711876 (-)
G148417 NA non-coding downstream 536984 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 538225 5451000 ~ 5454248 (-)
G148400 cdca4 non-coding downstream 612345 5377749 ~ 5380128 (-)
G148364 NA non-coding downstream 751790 5236868 ~ 5240683 (-)
G148610 NA non-coding upstream 147267 6147929 ~ 6148286 (-)
G148801 NA non-coding upstream 1139700 7140362 ~ 7140968 (-)
G148962 NA non-coding upstream 1758020 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 1955310 7955972 ~ 7956264 (-)
G149030 NA non-coding upstream 2303157 8303819 ~ 8304215 (-)
G148395 NA other downstream 649982 5338809 ~ 5342491 (-)
AMCG00000161 NA other downstream 915227 5071467 ~ 5077246 (-)
AMCG00000084 zbtb42,LOC106582697,LOC106610857,LOC103136097,LOC102793331 other downstream 2433572 3552159 ~ 3558901 (-)
AMCG00000050 NA other downstream 5051638 890112 ~ 940835 (-)
G147324 NA other downstream 5506890 484720 ~ 485583 (-)
AMCG00000180 NA other upstream 3524 6004186 ~ 6012637 (-)
AMCG00000177 NA other upstream 45003 6045665 ~ 6067184 (-)
AMCG00000168 gchfr,LOC106583112 other upstream 150058 6150720 ~ 6154301 (-)
AMCG00000189 NA other upstream 206852 6207514 ~ 6209957 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other upstream 213343 6214005 ~ 6216441 (-)

Expression


Co-expression Network