XLOC_000590 (arl11)


Basic Information

Item Value
gene id XLOC_000590
gene name arl11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46652615 ~ 46654528 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001022
CGTGTCGCTTCTCCTTTTTCACAGGATTTCCTTCAAAAACAGAAGCTGAAACCTTAAGACTCCGATGCCCTGCAGAGGAATCAACCCTTCGTAAGCTCATCCAGGATCCAAAATGGGCGCCATCAAGTCCAAACGGTTTAAAAAGCCTCCTCAGGTGCTCATCATGGGCTTGGATTCAGCAGGAAAATCTACTTTAATGTACAGGCAGCTGCACGGGGTCATCATGCAGACCTCGCCCACCGTGGGCTTCAATGTGGCGACCCTCCAGCTGAACAAGAAGACCTCCCTGACCGTGTGGGACATTGGAGGGCAGGACACCATGAGGCCCAACTGGAAGTACTACCTGGAGGGATGCAAAGTGCTAGTGTTCGTGGTGGACAGCAGTGATTACGCCAGGATCGGAGAAGCTCAGAAAGCCCTCAAGAAGATCCTGCACGATGAGCATCTTAAAGGGGTTCCCCTGATGGTGCTGGCCAACAAAAAGGACCTGCCGAACACCATGACTATCAGAGAGGTGTCCACCAAGCTGGATTTGGACACTTACACGGATCGCCAATGGGAGATTCAAGCCTGCAGCGCTGTGAAGGGTCTGGGTCTCCAACAAGCCTTTCTGTCTATAGCTAAACTACTGCAGAAAGCATGAGGACTGGGAAATGTGACGCAGTTTAAACTTATTATAGTATATGTTAATGACACTTTATTCGTGTTATTAtacaggtaacactttaaaataaggctgttttagttaatgttacttggcaaacaatgaacaatatatttattatgtttgtttgttaaagaaaataaagagaTTTACTGTTCGTGTTAACTCGCAGTGCATTAACTATTGTCAACAAGCATGAACTTGGAATTTAAAGGACACCTAATTTTACCCTTTATAAGACGTAAggtaagcctttggtgtctctagaatgtgtctatAAAGTTTCTGCTGAAAATACCCATCACaatatttattatagcctccagaatctgcccattttggtgtctgaatacagtgtagctgtttttgtagcctgtggctttaaatgcaaatgagctgcttctccccgcccatcGTTTCCATGTGCGCATCTGCTTCTTTCGCCCCATGCACTCTGGACTTCAGCGTCAACgagtgtctgaagttggggctgacgtgatcaggcccggccctaaccaatttggcaccCTAGGCAAAATTTCAGGTGGcaccccgtcacatcgcagtaaattccaatgctagtgtatagtcataaatagctttttgatcgacaaCTACAAGcagggaaaacgtcagataaatatgccaatgcaattaatgttattgctgaatagatttaatatttacacatttgcatgAGGATGTAATGATGGGGGTATACATTATATTGAATAATAggaaccattttttattattttttgtctcttttcttttaatcaaacaattatttgtattggtcatgtaagtgtcatatattaactgaatttctaatgttgtgggtgagtgctgtgcatactaattagcatttttgcagaagtagatagatgcgggtccaaaattaaattcagctctgcagaaacttcctgtctgaagagaggtgttaaaactgaacacagaacacagaaaaatgtatactttgttgttgggcagagaattcatagaaaaagaggaagtatgccgAAGGGgcagccaatggaggactgaacaatgactgacaagtgacgttacaccaaaactccacctgttaagatcggtggtgtatatatgctgaagtcaggaaatatatgttagttgcgaacctcttgaatgtaattcttgtattgcattggggtaatgtaacccagagctctgtcatcgaattattcatttgtatccaataaattgttacgatttttgacattgaagaaaaa

Function

symbol description
arl11 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL11 (ADP ribosylation factor like GTPase 11).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-030131-3410 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL11 (ADP ribosylation factor like GTPase 11).

Ensembl:

ensembl_id ENSDARG00000036637

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001022 True 1914 mRNA 0.42 1 46652615 46654528

Neighbor

gene id symbol gene type direction distance location
XLOC_000589 cab39l coding upstream 35332 46598502 ~ 46617283 (+)
XLOC_000588 mcf2la coding upstream 58327 46493944 ~ 46594288 (+)
XLOC_000587 tubgcp3 coding upstream 199929 46404968 ~ 46452686 (+)
XLOC_000586 BX465849.1 coding upstream 250979 46400612 ~ 46401636 (+)
XLOC_000585 NA coding upstream 345065 46307015 ~ 46307550 (+)
XLOC_000591 NA coding downstream 64568 46719096 ~ 46726957 (+)
XLOC_000592 NA coding downstream 81200 46735728 ~ 46736116 (+)
XLOC_000593 CU986305.1 coding downstream 173363 46827891 ~ 46845676 (+)
XLOC_000594 tmprss3b coding downstream 293482 46948010 ~ 46957351 (+)
XLOC_000595 NA coding downstream 305374 46959902 ~ 46964228 (+)
XLOC_000584 NA non-coding upstream 380289 46263451 ~ 46272326 (+)
XLOC_000583 NA non-coding upstream 400791 46249979 ~ 46251824 (+)
XLOC_000582 NA non-coding upstream 404024 46247618 ~ 46248591 (+)
XLOC_000597 NA non-coding downstream 498662 47153190 ~ 47155997 (+)

Expression


Co-expression Network