AMCG00000190 (cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849)


Basic Information

Item Value
gene id AMCG00000190
gene name cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6214005 ~ 6216441 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000190
ATGACGCTGTGGGACACAGAGTTTGAAGTGAAGGACAGTAGCTCGATTAGAGAATGGAGTGGACAGGTCCAGCCAGCTCTCATCGCTTCCCTCGTGCTGCTATTCTGTTTGGAAGCCTTTCTGTGGGTGAGAAATATGAGGCAAAAGAGACGCCTGCCTGGCCCCTTTGCCTGGCCACTGGTAGGCAATGTGATGCAGCTGGGACAAATGCCCCATATAACTTTTTCCAGGCTGGCCAAGAAGTATGGCAATGTCTTCCAGATCAAATTGGGCTGCAATGACATTGTAACGCGAGACATGAGTGATGCCTTCATCGGTATCATAGAACATGGAAGTGGCAGCAAGAAGGGACTTACCAAAGAGCATGTTGAGGGAACTGTCACAGATCTCATGGGTGCTGGGCAAGACACCATTTCAACAGCTATGCAGTGGATCCTCCTTCTTTTGGTAAAATACCCCAACATCCAAACTAAACTGCAAGAGCAGATTGACAAAGTCGTGGGAAGAGACAGGCTTCCCACCATCGAGGACAAGGGCAGTCTGGCCTACCTGGAAGCCTTCATCTACGAGACCATGCGCTTCACCAGCTTTGTACCAGTGACGATCCCCCACTCCACCACCTCTGACGTGACAATCGACGGCCTCCACATCCCCAAGGACACTGTGGTCTTCGTGAACCAGTGGTCTGTCAATCACGACGAGAAGAAGTGGAAGGATCCTCACGTCTTTGACCCCTCGCGCTTCCTGGATGAGGATGGCATGATAGACAGGGATCTGACCAGCAGTGTGATGATCTTCTCTATCGGGAAGAGGAGATGCATCGGTGACCAGATCGCTAAGGTCCAGATATTTCTGTTCACGGCCATCCTAATCCACCAATGCAGCTTTGAGAGCAACCCTTCTGAAAACCTCACTATGGACTGTTCTTATGGCTTGGCATTGAAGCCCCTCCACTTCACTCTATCTGCCAAGCTCAGGGGGAAGCCTTTAGGCCCGATCTCAACAGCATAA
>TU187026
aaggagaaaaaaaaaatacccaagGAGGTCTTCTACACCTAATGAAACGTTAATGAATTAAGAAGGAAGGTGGTAGTCGTCTTGAAAAGTGGACTGGATTCTAAATCACAATTTAACAGATCATTGGTTTTACAAGGATATTCTGtgaaattgaaaaaacacaGGTTTCCAAAACTAAAACAGGTCATTTTAAAACTTGATATTGGGATATTGGTGCacctatatttttatttctaatatttcagtgaaaacttcagtgaaaagtgaaaagatTTGAAGAGTTGGACTGTTGGACTGCATCTTTTTAGACAACCTGTAGGTCTTCAAACAGCTTGCGACTTCCAAAGCATTAGCATCATCTATTGCTTAGCCAATCACAATGACGCTGTGGGACACAGAGTTTGAAGTGAAGGACAGTAGCTCGATTAGAGAATGGAGTGGACAGGTCCAGCCAGCTCTCATCGCTTCCCTCGTGCTGCTATTCTGTTTGGAAGCCTTTCTGTGGGTGAGAAATATGAGGCAAAAGAGACGCCTGCCTGGCCCCTTTGCCTGGCCACTGGTAGGCAATGTGATGCAGCTGGGACAAATGCCCCATATAACTTTTTCCAGGCTGGCCAAGAAGTATGGCAATGTCTTCCAGATCAAATTGGGCTGCAATGACATTGTGGTTCTCAATGGAGAGACTG

Function

symbol description
cyp1c1 Enables coumarin 7-hydroxylase activity; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; and testosterone 6-beta-hydroxylase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region.
cyp1c2 Enables coumarin 7-hydroxylase activity; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; and testosterone 6-beta-hydroxylase activity. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region.

NR:

description
PREDICTED: cytochrome P450 1B1-like, partial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000190 True 1011 mRNA 0.51 2 6214005 6216062
TU187026 False 686 TUCP 0.41 1 6215756 6216441

Neighbor

gene id symbol gene type direction distance location
AMCG00000169 NA coding downstream 87645 6125794 ~ 6126360 (-)
AMCG00000179 inf2 coding downstream 144173 6067655 ~ 6069832 (-)
AMCG00000176 chp1 coding downstream 184209 6017546 ~ 6029796 (-)
AMCG00000178 NA coding downstream 213343 5992473 ~ 6000662 (-)
AMCG00000167 rtf1,LOC102785722 coding downstream 229432 5971780 ~ 5984573 (-)
AMCG00000188 rad51 coding upstream 28278 6244719 ~ 6258200 (-)
AMCG00000187 NA coding upstream 44179 6260620 ~ 6279544 (-)
AMCG00000191 NA coding upstream 68568 6285009 ~ 6288346 (-)
AMCG00000182 NA coding upstream 259000 6475441 ~ 6480300 (-)
AMCG00000184 NA coding upstream 304586 6521027 ~ 6552330 (-)
G148610 NA non-coding downstream 65719 6147929 ~ 6148286 (-)
G148486 NA non-coding downstream 502129 5711019 ~ 5711876 (-)
G148417 NA non-coding downstream 758516 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 759757 5451000 ~ 5454248 (-)
G148400 cdca4 non-coding downstream 833877 5377749 ~ 5380128 (-)
G148801 NA non-coding upstream 923921 7140362 ~ 7140968 (-)
G148962 NA non-coding upstream 1542241 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 1739531 7955972 ~ 7956264 (-)
G149030 NA non-coding upstream 2087378 8303819 ~ 8304215 (-)
G149068 NA non-coding upstream 2312626 8529067 ~ 8583456 (-)
AMCG00000189 NA other downstream 4048 6207514 ~ 6209957 (-)
AMCG00000168 gchfr,LOC106583112 other downstream 59704 6150720 ~ 6154301 (-)
AMCG00000177 NA other downstream 146821 6045665 ~ 6067184 (-)
AMCG00000180 NA other downstream 201368 6004186 ~ 6012637 (-)
G148395 NA other downstream 871514 5338809 ~ 5342491 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other upstream 340264 6556705 ~ 6563305 (-)
G148851 gpx2 other upstream 1144781 7361222 ~ 7362692 (-)
G149011 NA other upstream 1879524 8095965 ~ 8106839 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other upstream 2809899 9026340 ~ 9045855 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other upstream 2953642 9170083 ~ 9188266 (-)

Expression


Co-expression Network