AMCG00000198 (LOC106586563)


Basic Information

Item Value
gene id AMCG00000198
gene name LOC106586563
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6500893 ~ 6520863 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000198
GCAGACCGGCTGAAGTGTGCAGGAGTCACTTGCCCCAGTCACCCCACTCCAGACTGTCCCAAAGACTCGGCACTGAGCAAGAGTTACACCCCCCCCTCTGGGTGCTGCCCCACTGTGCCCCCACTCTGCACCTGTAATTTCCGGACATGCAAGAACAAGGAATGTCCTTCTGGTCAACAAGCTGTGCTGCTTCGAGAAGCTACAGGAACCCCGGGGGATTGCTGTGACGTCCATGAGTGCCAAAGAgTTGCCCCGAAGTGTGTGCACAACGGGAAGGAGTTTTCTGACGGGGAGGTTTACAAAATGGACCCTTGCTGGCTGTGTCAGTGTCGAGGCGGGATTTCGTTCTGCTCCAAAGCGGAGTGTGCACGACTGGACTGTGAGAGCTCCTACACTCCGGAGGGAGAGTGCTGTGCCGTGTGCATAGATGTGGAGCTGATGTCCCTGGAGAGCACGGACGCCAGCTGCTGGGTGAACAACAGATTGCGGCACCATGAGGAGCAGTGGAAGGAGGACGACTGCACCTTCTGTCAGTGTGTGGACGGGGACCCCCACTGCACGGCCATGGCCTGCAAACAGACCTGCCAGAACCCAGTCAAAATACCCGGGGAGTGCTGTCCTTTCTGTGAAGAGCCAACATATGAAACCGTGAGTCCAATTCTGTGTCCCAAGCTGGAGAACTGCTCACTCTCGGAGAAAGACTGTCCTTTTGGCTTCGTGCAAAACAAGAAGGGATGCCTGCTATGCCAGTGCTTAACAAATGACTCCTGCCCAGATCTGAGGAAATACTGCTCACTGCAGTGTCCGAATGGCTATGAGAGAGATGACTATGGATGTCAAGTGTGTGAATGCATCCCTCAGACACCGAAATGCCGACAGTTGTCCTGTAGTAAGACCTGCCCTTACGGATATGTGAGGAATAAGCACGGGTGCGAGATGTGTCGCTGTGTGAAGTGTCCTCCCTTCACTTGTGACAAGGACTGCTGGGATGGGTACAAGCAGAATAAGAAAGGGTGCTCCATCTGTGTTTGTAAAGAGACTGATCACGTCCCTAGCACCACGACTCCGGCCCCCACAGCCAGCTACTGCCTGACCGCTAATGGGTACCGGTATGAGGAAGGGGAGAGCTGGCACGATGGCTGCCGGGACTGTTACTGCCATGCTGCTCGGGAGATGTGTGTCTTGATCACTTGCCCAGTACCCAGTTGTTCCCACCCACTGGTCAGGCCAGACCAGTGTTGTCCCAGCTGTGAAGATGAGTCGGGCAGTGGGCAGCCAGAAGGGGTGGACCTGGTGGTGTGTAAAGCTCCAGGCGGGGATTTCTACGTGGAAGGAGAGACGTGGGAACTGGACGAGTGCACGCGCTGCACCTGCAGGAAAGGCCGGGTCCTGTGCGACACCGAAGTCTGTCCTCCGGTGCTCTGCCAGGCACCCACAAGAAGCAAGGACACCTGCTGTTATGTCTGCCCAGATGACCAGTTGAAACCCCTGCTGCCAGTGAACACCAGTCAGTCTGAGTACTGTATATCCAGCGAAGGGGAAATTCTCCTGGCTGGAGACTCCTGGAAAGCCAACCCCTGCACCAGCTGCACCTGCAACAACGGAACGATACAGTGCTTTTCCCAGAGGTGCCCTCCTGCCAACTGCCGGGTTCCTGTCCTGAGGAAAGGTCAATGCTGTCCATATTGCTTAGATATTACAACAACAGTCGTTCCCCTGCTACCGTCAACCCAAACACCCAAAGACAATGCCACCCACACAGAGGACAGCGGACAGTGGCTGCCCACTACTGGACTGCCGCCCATCATTGCAATTACAGATGGGAAAAGTCTCAACGAGGACATCCCCAGTCAGACAGAGGTGGCATTGATATACCAATCAGCGGCCTGGATCTTAGCTGGCATACTGCTGGCCATTGTGATATTCCTCATCGTCGCTCTACTAATcaacaagaagaagaaatggGTCCAAATGTCTTGCTACAGTGCACCAAAAAAGACAGTGATTCTGAAAAAGCACGTGAATAAGAACTCTGTGGTTTACATGGAGCCATCGAAAGAAAACAAGTTTCAGAACGTCAAGAGCGACTGCACGGTCAATTTCACCACAGAGGCCAGCTCGGCCAACGGAGAGAGATACAGCATCCCAAGAGCCAAAGTGAACAGCAAGCAGAGCAGGCTCTTGGGCTAGGAGAGACGGAGAAGTCTCCACATgaactgattttgtttctgcatttcaaCAAAGATCATTCAGATATATACCTTGGACAGTAGTCtttaatgaaatgaatgaaGATTTCTACGTACATTGTTTTGTGATGTTTCTTTTTGAGTTTTGAGCTTTAAAATTGCCCCGTTATTTCATGAAAGGAAAAGGGAGCCATATCCATGCGTCCTCGTTGTAAACGTGCATGAGACTGACAGGAAGGAAGCAGCCCAGGGTTTCAGACTGGGGAAGCTATCCTGAATATTTATCTTAATAGCATACAAATGTAGTCTGTTAAAAATTAATTACAGCAGCACAAAATAGTAACAATAAGCATAGGCTTAATTCCAagatttagttattttagttGTTCCGGTTTCAAACTATTTTTGCCACTTATCTGCTTCTGTACGCCATCTTTGCAGTTGATCAGGTTAACTTTAGAAAGCTGTGAAGACTATCTTTCACTTGTCCAACAACATAAAGAactgctctctctgctctctcctctcGACTATAAAGCCATTCCAGTAGCACGCCCTGCAAATAGAAAGTGAAGATAATTAAAGACACTGACATGCAAGAGAAACTAAACCGGAGCAACACTTTTTGGTAAGTATGACATAAGAGTTTGTTGCATAACAAGACTGTACAATTTCACAACTACAGTAGACATACTTCTATCATCTTATTTCTGTGCATAGATTGCctttcatgcttttgttttgtaaccttTGTGGGTGGGGGGAACCAATTCATTTTGTAATCTTTAACAGATAAATAGAAccttctttgtatttttaattttatgtaaatgAGAGAATGTGAGAATCTAAAAGTGTTCTGGAATGGGTTAGCTGCAGGAACTCTGGAGTTAATTATGTGATTAGTCTCCACTATTGTCTTGCTAGTAGAGgcattgttttataatgcaCAGGGGTTGGTCCATctattatttttcagtcattCACAGATTCCACAATCTGTTACACTGTTAAGAGCAGGACAAAGTTCATATACTGTCCAATGCTGgacataaatgcaaaatgatCGACAGATTAAATAAACGCAAACCTGCTGTTCAAACAGGCTTAATCACCATGACTGGAAtgaacattataattaaaaacaaaaatcctatTGTTTTTATCAGCTATCTGATCGAAAGTCTGTAGCGAAACTGCCTTATTTGAATTGtttcagatatttaatttaaatgtgacatttgtatttatttcttaaaataatatatattgtccTGCTTTACAGAGTGTTTTATAATCTGAACCAGTCTGGAGAGCATTAGCCTGTTTGGAGTCTCATAGAAAGGGGATTGTAAGTGAAAGTACATTTCAGTATCAGTAGTTAAATGACGAAGTGAATCTTTTGCAATGTGTTTGAAGGAGAGGGAGTTTTCCGGGAATAACGATCACACTTTGAACTAGAGAGCAGAATGGTGATAAACACACCAAGGAGCTCCCGCCGAGCTCTGACCGAGGACCACAAATGGTCCAAGCAGAGTGACGCAATCACAATCAACTCCTCTACTTCCTGTAAAAAGGTTGTCTTTTTTTCACAAATTGTTCCAAAAgaaatcacttaaaacaaataatatgctTTTAACACTTATACAGGCAAATTCAAAGACCTGATGGGGATGATCAATCAGGCAATTTCTACAAGAACCACAGTCTTCACGAAAAGCTCTTGTTCTTTCCATAGAAATCAACCGGCCTTGTGTAGGAGctgtatttcttatatatatatatatatatatatcacatatatCACTTTTAGAAGTCTTTAAATTTGATAGGTGGGGATCTATCAGATTTAAAGTTTTCTAAAAGTGATATATGGAGAACACTCCCTCAGATTTCATATAATTCTTCCTGTAATTCTACCCAACTATCatgatgtaaatatttgaaataacttGAGTTACACAGTGAAGACCATTATTTACCAGGAATACAAAAGCTCCAGCACtgtttatatacaaatgttCTAACTTTTTCAGTATTCCTGTGTTTCTGATTAATTCAGACCATATAACATTACCCCCTGTAAAGCtgtaaaacttttttaattctgaccaaatagTCTGTATTCCATTACAATTATGTCGACAATATATTTCTTTGTAAAAGTGCAATGCGGGAGAGGTAcagtggtatatatatataaaaataaaattctggCACCTCAGATATaagaaaaatgcagaatttTTAACATATTGTGATGAAAAGAGTCTGCCCCCATATCACCAGATTGATGATTTCAAACTTGTCtagatatgttttttctttttacagacTATTCATCTAAAGCACCGGTTCTTATGATTCTTGTTAGTGTGTGAATTACAAAGAAACTGCCGCTCTTCAGAAGCGCATCGTAGGGCTGCGGCTGTGCTAATTCCATAtgtatgaaatatgttttgcattttaaaggcTTTTTATTTCAAGAGACACCCTGCTGTTTCAGCCATGCATTCGAACAGTAATACATCAGTCATGTGCACCCGTCAGTCCTGAGAGACGCCTGTGGTGATCGTTAGAGTTGAGAATATGACAAACTAGCTGTACTTGGTGTAAACTATTTAGGGTGAAGCATCTACACGTGATAACCTTAGAGATAAATTGTTCTTTCCCTggatattttattacaatgccGGGAATTGAAGGTCAGAGCATTACAGCTTACCAAACACAACTGAAGTGGatgatttgaaaaagaaaatcattgtgCTTTAATTGAAGGACAGAAAAAAGAAGCTACTCTTGAAAACTTTTACAGTTGTTTGTAATTCCGAAGTGTTAAAAAAAGTAGATAAAAGTAGCTGAAAGAAGAgtaccttatttattttttcacatagctttatttattaatactaaaCTATAGTTTGAGAAGCTTATATGAGATTATTTTCACTAGTAAACAGGCAGTAACCAATGCTGCTGTACATTTGTAGTATTgtaatctttttgttttcctttgtctgCTTTCCTATCCTGAACATGTAAAActggcttatttattttctcagttgcaaactgtaaatatacatttcttagaTGTTCaactgtaactttttttttttttctcctcctgaAAAATAAACGGTGTGAACAAATACA
>TU187079
CAAGGATTCATATAACACTTtaagtgtttaatatatattatgccACGATGATTACTGAATGAAGCAAtagaatgcaaaacaaaaacacatgcaaaagaGCTTTCTTCTGTGCAGCCCTAACGAAGAATTGCACAATACTGTGTTAAAAAAGTGAATGAGAGTATTTAGTTTATAGGATGATGTGActgtaataaataaaggagAGACAACTGAAATTGCTCTGGGAAATATTCCATAGATTTAGAAATTGCAAAAGACTACTTTATTACTAAGGGGAAACACGCCAAGGGCCAAAAGAAGGCAACGGAGCTGCTTTCACTTAAATTGATTGGAACAGAATAATGTCATGGAAATATTTCCATCGTTTTACTATACTCCTTCATTTCAGAAGTCAGTACGGGAGATTTGATGTTATTACAACATGCTTTTGTGCTGTGGTCTTTGCTTCCTAGATGGGAAAAGTCTCAACGAGGACATCCCCAGTCAGACAGAGGTGGCATTGATATACCAATCAGCGGCCTGGATCTTAGCTGGCATACTGCTGGCCATTGTGATATTCCTCATCGTCGCTCTACTAATcaacaagaagaagaaatggGTCCAAATGTCTTGCTACAGTGCACCAAAAAAGACAGTGATTCTGAAAAAGCACGTGAATAAGAACTCTGTGGTTTACATGGAGCCATCGAAAGAAAACAAGTTTCAGAACGTCAAGAGCGACTGCACGGTCAATTTCACCACAGAGGCCAGCTCGGCCAACGGAGAGAGATACAGCATCCCAAGAGCCAAAGTGAACAGCAAGCAGAGCAGGCTCTTGGGCTAGGAGAGACGGAGAAGTCTCCACATgaactgattttgtttctgcatttcaaCAAAGATCATTCAGATATATACCTTGGACAGTAGTCtttaatgaaatgaatgaaGATTTCTACGTACATTGTTTTGTGATGTTTCTTTTTGAGTTTTGAGCTTTAAAATTGCCCCGTTATTTCATGAAAGGAAAAGGGAGCCATATCCATGCGTCCTCGTTGTAAACGTGCATGAGACTGACAGGAAGGAAGCAGCCCAGGGTTTCAGACTGGGGAAGCTATCCTGAATATTTATCTTAATAGCATACAAATGTAGTCTGTTAAAAATTAATTACAGCAGCACAAAATAGTAACAATAAGCATAGGCTTAATTCCAagatttagttattttagttGTTCCGGTTTCAAACTATTTTTGCCACTTATCTGCTTCTGTACGCCATCTTTGCAGTTGATCAGGTTAACTTTAGAAAGCTGTGAAGACTATCTTTCACTTGTCCAACAACATAAAGAactgctctctctgctctctcctctcGACTATAAAGCCATTCCAGTAGCACGCCCTGCAAATAGAAAGTGAAGATAATTAAAGACACTGACATGCAAGAGAAACTAAACCGGAGCAACACTTTTTGGTAAGTATGACATAAGAGTTTGTTGCATAACAAGACTGTACAATTTCACAACTACAGTAGACATACTTCTATCATCTTATTTCTGTGCATAGATTGCctttcatgcttttgttttgtaaccttTGTGGGTGGGGGGAACCAATTCATTTTGTAATCTTTAACAGATAAATAGAAccttctttgtatttttaattttatgtaaatgAGAGAATGTGAGAATCTAAAAGTGTTCTGGAATGGGTTAGCTGCAGGAACTCTGGAGTTAATTATGTGATTAGTCTCCACTATTGTCTTGCTAGTAGAGgcattgttttataatgcaCAGGGGTTGGTCCATctattatttttcagtcattCACAGATTCCACAATCTGTTACACTGTTAAGAGCAGGACAAAGTTCATATACTGTCCAATGCTGgacataaatgcaaaatgatCGACAGATTAAATAAACGCAAACCTGCTGTTCAAACAGGCTTAATCACCATGACTGGAAtgaacattataattaaaaacaaaaatcctatTGTTTTTATCAGCTATCTGATCGAAAGTCTGTAGCGAAACTGCCTTATTTGAATTGtttcagatatttaatttaaatgtgacatttgtatttatttcttaaaataatatatattgtccTGCTTTACAGAGTGTTTTATAATCTGAACCAGTCTGGAGAGCATTAGCCTGTTTGGAGTCTCATAGAAAGGGGATTGTAAGTGAAAGTACATTTCAGTATCAGTAGTTAAATGACGAAGTGAATCTTTTGCAATGTGTTTGAAGGAGAGGGAGTTTTCCGGGAATAACGATCACACTTTGAACTAGAGAGCAGAATGGTGATAAACACACCAAGGAGCTCCCGCCGAGCTCTGACCGAGGACCACAAATGGTCCAAGCAGAGTGACGCAATCACAATCAACTCCTCTACTTCCTGTAAAAAGGTTGTCTTTTTTTCACAAATTGTTCCAAAAgaaatcacttaaaacaaataatatgctTTTAACACTTATACAGGCAAATTCAAAGACCTGATGGGGATGATCAATCAGGCAATTTCTACAAGAACCACAGTCTTCACGAAAAGCTCTTGTTCTTTCCATAGAAATCAACCGGCCTTGTGTAGGAGctgtatttcttatatatatatatatatatatatcacatatatCACTTTTAGAAGTCTTTAAATTTGATAGGTGGGGATCTATCAGATTTAAAGTTTTCTAAAAGTGATATATGGAGAACACTCCCTCAGATTTCATATAATTCTTCCTGTAATTCTACCCAACTATCatgatgtaaatatttgaaataacttGAGTTACACAGTGAAGACCATTATTTACCAGGAATACAAAAGCTCCAGCACtgtttatatacaaatgttCTAACTTTTTCAGTATTCCTGTGTTTCTGATTAATTCAGACCATATAACATTACCCCCTGTAAAGCtgtaaaacttttttaattctgaccaaatagTCTGTATTCCATTACAATTATGTCGACAATATATTTCTTTGTAAAAGTGCAATGCGGGAGAGGTAcagtggtatatatatataaaaataaaattctggCACCTCAGATATaagaaaaatgcagaatttTTAACATATTGTGATGAAAAGAGTCTGCCCCCATATCACCAGATTGATGATTTCAAACTTGTCtagatatgttttttctttttacagacTATTCATCTAAAGCACCGGTTCTTATGATTCTTGTTAGTGTGTGAATTACAAAGAAACTGCCGCTCTTCAGAAGCGCATCGTAGGGCTGCGGCTGTGCTAATTCCATAtgtatgaaatatgttttgcattttaaaggcTTTTTATTTCAAGAGACACCCTGCTGTTTCAGCCATGCATTCGAACAGTAATACATCAGTCATGTGCACCCGTCAGTCCTGAGAGACGCCTGTGGTGATCGTTAGAGTTGAGAATATGACAAACTAGCTGTACTTGGTGTAAACTATTTAGGGTGAAGCATCTACACGTGATAACCTTAGAGATAAATTGTTCTTTCCCTggatattttattacaatgccGGGAATTGAAGGTCAGAGCATTACAGCTTACCAAACACAACTGAAGTGGatgatttgaaaaagaaaatcattgtgCTTTAATTGAAGGACAGAAAAAAGAAGCTACTCTTGAAAACTTTTACAGTTGTTTGTAATTCCGAAGTGTTAAAAAAAGTAGATAAAAGTAGCTGAAAGAAGAgtaccttatttattttttcacatagctttatttattaatactaaaCTATAGTTTGAGAAGCTTATATGAGATTATTTTCACTAGTAAACAGGCAGTAACCAATGCTGCTGTACATTTGTAGTATTgtaatctttttgttttcctttgtctgCTTTCCTATCCTGAACATGTAAAActggcttatttattttctcagttgcaaactgtaaatatacatttcttagaTGTTCaactgtaacttttttt

Function

GO: NA

KEGG:

id description
K24518 CRIM1; cysteine-rich motor neuron 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000198 True 5348 mRNA 0.43 12 6500893 6520863
TU187079 False 3940 TUCP 0.36 2 6516507 6520822

Neighbor

gene id symbol gene type direction distance location
AMCG00000181 NA coding upstream 135919 6357128 ~ 6364974 (+)
AMCG00000183 NA coding upstream 217836 6279548 ~ 6283057 (+)
AMCG00000185 NA coding upstream 330805 6157794 ~ 6170088 (+)
AMCG00000186 dnajc17 coding upstream 391756 6098493 ~ 6109137 (+)
AMCG00000174 NA coding upstream 466629 6031289 ~ 6034264 (+)
AMCG00000202 actc1a,actc1,act2,LOC105024319,LOC100194557 coding downstream 36979 6557842 ~ 6562820 (+)
AMCG00000200 NA coding downstream 43488 6564351 ~ 6574765 (+)
AMCG00000199 scg5,LOC107721259 coding downstream 55416 6576279 ~ 6587927 (+)
AMCG00000203 LOC106571103 coding downstream 69720 6590583 ~ 6591140 (+)
AMCG00000204 NA coding downstream 74460 6595323 ~ 6597169 (+)
G148656 NA non-coding upstream 194026 6306628 ~ 6306867 (+)
G148631 cyp1c1,cyp1c2,cyp1c3,LOC106610849 non-coding upstream 284434 6215756 ~ 6216459 (+)
G148618 LOC107745367 non-coding upstream 286133 6207353 ~ 6214760 (+)
G148609 NA non-coding upstream 352608 6147922 ~ 6148285 (+)
G148545 chp1 non-coding upstream 471116 6018043 ~ 6029777 (+)
G148764 NA non-coding downstream 402431 6923294 ~ 6927254 (+)
G148768 NA non-coding downstream 412437 6933300 ~ 6935160 (+)
G148791 NA non-coding downstream 571162 7092025 ~ 7092460 (+)
G148919 NA non-coding downstream 1163015 7683878 ~ 7684097 (+)
G148961 NA non-coding downstream 1238506 7759369 ~ 7759597 (+)
AMCG00000201 NA other upstream 26661 6469345 ~ 6474232 (+)
AMCG00000175 NA other upstream 489496 6000911 ~ 6011397 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other upstream 612866 5881023 ~ 5888027 (+)
AMCG00000142 NA other upstream 1046687 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 1160343 5334513 ~ 5340550 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 769803 7290666 ~ 7296965 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other downstream 793009 7313872 ~ 7324451 (+)
AMCG00000217 gpx2 other downstream 838415 7359278 ~ 7362707 (+)
AMCG00000251 NA other downstream 2052073 8572936 ~ 8575124 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other downstream 2058854 8579717 ~ 8585273 (+)

Expression


Co-expression Network