AMCG00000201


Basic Information

Item Value
gene id AMCG00000201
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6469345 ~ 6474232 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000201
AACATCATGGACAAGTGCAGTTGGCATCAGGAGACACTCAGTGTGTTTTGTGAAGATGATAAGGAGGCGCTTTGTCCCCAGTGTGTGGCGTCTGAGAGTCACAGAGGACACACCCTGAACTTGCCGGAAAAGGCAGTGCAGCTCTTCCAGACTGGTGCCTCCAGCAATGAGAAGCGTCTGACCCAACTGTTTGAGAGGCTTCAAAACGTCCTCCAGAGGAGCTCTGCTGAGCTGCAGTCAGAGCTGGAGAATGAACGGACAGTGCAGACTCAACTCATACAGGGAAACATTCAGACAATGACTGGCATTTTAAGTGCTGTTTCAGTCCATATCCAAAGCCTGGATGAAATGGATGATGAGAATAAAGAGCACCTGGATCTTAGGAAATTTGAAATTCCAGCAATAGATATCAGTAAGAATATAAATTCGGATTACTACCTGGGAAGGTTTGTTCACAGAATTTGGAAACAGACACAAGCGTCTAAGTTTTTAGTTCATTCAGTGCCTGTGACTCTGGACCCTGATACCGCCCACCCTGAGTTGACTCTCTTTGAGGGCCTCACGTGTGTACGGTACCGGGGAAGAAGACTGCGTGTGCCAGACTACCCGTCGAGGTTCGACCAGTGCCCTTGCGTGCTCGGGACTCCGGGTTTCCAGGATGGGCGGCACTATTGGGAGGTGAGAGTGTGGAACAAGATGGAGTGGGACCTGGGAATGACAACACAGTCGGCCAACCGCAAGGGTGCAGTGAACCTTGACCCCGCCCATGGATACTACGCCATCATCTTGAGAAATGGCAACTCTTATGCTGCCTGCAGTTCTCCCCAGGTCCCACTCCGGCCACCACGACAGCCCAGCAAGATCGGGATCTTCCTAGATTATAACAAAGGTACACTATCTTTCTTGGATGCCAATGGCATGTATCCACTGTACACTTTTGAGGAGAATTTCACTGAAAAGCTTTACCCATTCTTCAGCCCAGGTATGGTTATCAATGGCCACAATGTAGAGCCTCTGAAA
>TU187068
CTTCAACAGATGTTTAATAAATCACcacaatttttgtttttcaattcagaAACAAGAAATTTGAAATTCCAGCAATAGATATCAGTAAGAATATAAATTCGGATTACTACCTGGGAAGGTTTGTTCACAGAATTTGGAAACAGACACAAGCGTCTAAGTTTTTAGTTCATTCAGTGCCTGTGACTCTGGACCCTGATACCGCCCACCCTGAGTTGACTCTCTTTGAGGGCCTCACGTGTGTACGGTACCGGGGAAGAAGACTGCGTGTGCCAGACTACCCGTCGAGGTTCGACCAGTGCCCTTGCGTGCTCGGGACTCCGGGTTTCCAGGATGGGCGGCACTATTGGGAGGTGAGAGTGTGGAACAAGATGGAGTGGGACCTGGGAATGACAACACAGTCGGCCAACCGCAAGGGTGCAGTGAACCTTGACCCCGCCCATGGATACTACGCCATCATCTTGAGAAATGGCAACTCTTATGCTGCCTGCAGTTCTCCCCAGGTCCCACTCCGGCCACCACGACAGCCCAGCAAGATCGGGATCTTCCTAGATTATAACAAAGGTACACTATCTTTCTTGGATGCCAATGGCATGTATCCACTGTACACTTTTGAGGAGAATTTCACTGAAAAGCTTTACCCATTCTTCAGCCCAGGTATGGTTATCAATGGCCACAATGTAGAGCCTCTGAAAGTCTGTTGACTGGGTTTGCAATATGGCGTCAACTATATTGTGAATAGATTAGAAACTAAGACATAACAGAATACAAACAGGTCATTAGTAGTACTGATAACAtatttctttgtatgttttatcCTAGTTTGTCATTAGAAGGTCAAAGTTAGAAGATACAGTGGAAGGTGGCaggtattttctttattttaaattatttatttgagtctGTGGGTGTCAAATCACTGTCTAACCTCTTCAGCTACTGGTCTCCATTAACAATAGTGAAAATTGTAGTATTATTAGTACTTATATTTAAGCAAGGGGACTATTTCTCAGTCTTGGCAATTGCTATGCTCAGGTTTTCCATCCTAGTTGTGATTGAAATTAGGACATCTGGATTAAACTGTCACTTCAAGTTGGCACTTGTTTTGGCACTATTACAACTGTATTATTTCATGTTAAAAGCACTCTCTGATTCCAAGCTGTTaatgcaattacatttatttgccCAGATGTTATCAGTGACACAAAGTTAATACACTGAATATTGTATACAGGCGCATTATTGAACAATTCAATTTGTTGTGGATGGAATATTTCAAGAGAAAAAATAGACGATTAAGACATTTGTAAAATCACAGAAAAGACAGTTAGGgcagcaaaaaacaacataacagcatattaaaacaatttaataaagaatTTAAATCATTAGATGTTGcattattcatgtttgtttgcttatataAGTTGCAGTGGGAATTGAGAATTGACCTGTGGCTTTGGATGTGATCTTTGATTGGATTGTTTTGACATGGTCtggttgctgtgtgtttttgtttgtgttagtgttttttatatttagacaAGGACCTGGAAGGTGTTTAGGTAGGCTCAAAAAGGAGTTCgggttttgctttgtgtttttttttttgtcctgcaCTTTCACCCAACACTGTATATTAACCTCCTCCACTTGTACCATATCCCTGCCTCTGTGTACCTGTTTCCCTAGACCCGGCCTATTTATCAATCCCAGCACTGTTGTTATCCCCCTACGGTGCCACAACATTACTCTTCCATTGTTGCTTGTGGAGGACAGATTCGAAGGGCAAGTGAATTCCTCCCGTCATCATTTGGACCAAAATGGAAGTATGGATACAGGCGTTCATTAAATGTATCGCTGAAAgagaaaagccaggagccatCGGCAGTATTGTAAAAAGACAATGATCCCTTCTCATAGTCCAGCAGAATGCCAATCTTGCTGGGCCATCTAACAACCTCGATGGGTAGTGTCTGCGAAGTGCAGGTTGAGTACTTGGATCCATCTCTCAACATAATGGCCCAGTAGCCACTTGACGGCCCCAGGCTGATGTTCCCTTTGCGTATCACTGACTCTCTCGCCACACCGAGGTCCCAGTGGATCTTCTCTCCAACCTCCACCTCCCAGTAGTGTCTCCCAGATATGAATCCCTGAGCTGCCAGAACACAAAGGCAAGTGTTGTAGCGCTCTGGGTTGTCGGGCACTTCCTGTCTCACTACAGTGTGCTCCACTGTCCTTCCATCCTCTGACACCAACAGATTGGGATGTGCCGTGTTCGGGTCGAAGGTCAGAGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000201 False 1020 mRNA 0.50 4 6469345 6472628
TU187068 True 2296 TUCP 0.43 2 6471431 6474232

Neighbor

gene id symbol gene type direction distance location
AMCG00000181 NA coding upstream 104371 6357128 ~ 6364974 (+)
AMCG00000183 NA coding upstream 186288 6279548 ~ 6283057 (+)
AMCG00000185 NA coding upstream 299257 6157794 ~ 6170088 (+)
AMCG00000186 dnajc17 coding upstream 360208 6098493 ~ 6109137 (+)
AMCG00000174 NA coding upstream 435081 6031289 ~ 6034264 (+)
AMCG00000202 actc1a,actc1,act2,LOC105024319,LOC100194557 coding downstream 83610 6557842 ~ 6562820 (+)
AMCG00000200 NA coding downstream 90119 6564351 ~ 6574765 (+)
AMCG00000199 scg5,LOC107721259 coding downstream 102047 6576279 ~ 6587927 (+)
AMCG00000203 LOC106571103 coding downstream 116351 6590583 ~ 6591140 (+)
AMCG00000204 NA coding downstream 121091 6595323 ~ 6597169 (+)
G148656 NA non-coding upstream 162478 6306628 ~ 6306867 (+)
G148631 cyp1c1,cyp1c2,cyp1c3,LOC106610849 non-coding upstream 252886 6215756 ~ 6216459 (+)
G148618 LOC107745367 non-coding upstream 254585 6207353 ~ 6214760 (+)
G148609 NA non-coding upstream 321060 6147922 ~ 6148285 (+)
G148519 NA non-coding upstream 424021 5851645 ~ 6045324 (+)
G148764 NA non-coding downstream 449062 6923294 ~ 6927254 (+)
G148768 NA non-coding downstream 459068 6933300 ~ 6935160 (+)
G148791 NA non-coding downstream 617793 7092025 ~ 7092460 (+)
G148919 NA non-coding downstream 1209646 7683878 ~ 7684097 (+)
G148961 NA non-coding downstream 1285137 7759369 ~ 7759597 (+)
AMCG00000175 NA other upstream 457948 6000911 ~ 6011397 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other upstream 581318 5881023 ~ 5888027 (+)
AMCG00000142 NA other upstream 1015139 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 1128795 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 1154392 5307190 ~ 5314953 (+)
AMCG00000198 LOC106586563 other downstream 26661 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 816434 7290666 ~ 7296965 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other downstream 839640 7313872 ~ 7324451 (+)
AMCG00000217 gpx2 other downstream 885046 7359278 ~ 7362707 (+)
AMCG00000251 NA other downstream 2098704 8572936 ~ 8575124 (+)

Expression


Co-expression Network