AMCG00000263 (psmc6,prs10,LOC107668141,LOC107582103,LOC107549540)


Basic Information

Item Value
gene id AMCG00000263
gene name psmc6,prs10,LOC107668141,LOC107582103,LOC107549540
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9011195 ~ 9017940 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000263
ATGAGTAAGTACTGCCAGGGACTGTGCGCCCTTCGGTCCTCCAGCGCTGCTCACCGCTATCCCAGAGTTCTCCGGCGCGGCGTCGATCCCACAATCCCCCGGGGCGCAGCCGGTCAGTGCAACATGGCGGATCCTAGAGAGAAGGCTCTGCAAGATTACAGGAAGAAATTGCTTGAGCATAAAGAGATCGACGGGCGTCTTAAAGAGCTGAGGGAACAGCTGAAAGAACTCACTAAGCAATATGAAAAATCAGAGAAtgacctgaaagctttgcaaagTGTTGGACAGATTGTGGGGGAGGTCCTCAAACAGTTAACAGAAGAGAAATTCATTGTCAAAGCAACAAATGGCCCACGATATGTTGTTGGCTGCCGTCGACAGGTGATTGAGCTGCCCTTGACAAACCCAGAGCTTTTCCAGCGTGTTGGAATCATCCCTCCAAAAGGCTGTCTGCTTTATGGACCACCAGGGACTGGGAAGACACTCTTGGCTAGAGCTGTTGCCAGTCAGCTCGATTGTAATTTCCTAAAGGTGGTGTCCAGTTCTATTGTTGATAAGTACATCGGAGAAAGTGCCAGGCTAATCAGAGAGATGTTTAACTATGCCAGGGATCACCAGCCCTGCATTATCTTCATGGATGAGATTGATGCCATTGGGGGTCGTCGGTTTTCTGAGGGTACTTCTGCggacagagagatacagaggaCACTGATGGAGcTCCTGAATCAGATGGATGGCTTTGACACCCTGCACAGAGTGAAGATGATCATGGCAACAAACCGGCCTGACACCCTGGACCCTGCTCTGCTGCGCCCCGGGAGACTGGACCGCAAGATCCATATCGAGCTGCCAAATGAACAGGCCCGCTTGGACATCCTGAAGATTCACTCTGGCCCTATTACCAAGCATGGAGATATAGATTATGAAGCGATCGTCAAGCTTTCAGATGGCTTTAACGGGGCTGATTTGCGGAATGTGTGTACTGAAGCAGGTATGTTTGCAATCCGTGCCGACCACGAGTACGTAACTCAGGAAGACTTCATGAAAGCTGTGCGCAAGGTGGCGGATTCGAAGAAGCTGGAATCGAAGTTGGACTACAAGCCCGTATAA

Function

symbol description
psmc6 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Orthologous to human PSMC6 (proteasome 26S subunit, ATPase 6).

NR:

description
26S protease regulatory subunit 10B

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03064 PSMC6, RPT4; 26S proteasome regulatory subunit T4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000263 True 1110 mRNA 0.51 12 9011195 9017940

Neighbor

gene id symbol gene type direction distance location
AMCG00000261 styx,LOC107680756,LOC107723651,LOC106602923 coding downstream 1718 9004531 ~ 9009477 (-)
AMCG00000264 NA coding downstream 21750 8988315 ~ 8989445 (-)
AMCG00000262 NA coding downstream 26272 8977624 ~ 8984923 (-)
AMCG00000265 NA coding downstream 33607 8962968 ~ 8977588 (-)
AMCG00000257 gch1 coding downstream 49820 8946663 ~ 8961375 (-)
AMCG00000268 NA coding upstream 75150 9093090 ~ 9099477 (-)
AMCG00000267 NA coding upstream 90497 9108437 ~ 9116668 (-)
AMCG00000269 cunh14orf166,zgc:56576,LOC107725214,LOC107680004,LOC107693089,LOC107583671 coding upstream 139920 9157860 ~ 9165637 (-)
AMCG00000272 frmd6,LOC102777289 coding upstream 176677 9194617 ~ 9210651 (-)
AMCG00000275 NA coding upstream 266418 9284358 ~ 9289212 (-)
G149132 NA non-coding downstream 65607 8882648 ~ 8945588 (-)
G149125 NA non-coding downstream 159416 8851316 ~ 8851779 (-)
G149087 NA non-coding downstream 266696 8743871 ~ 8744499 (-)
G149077 stxbp6 non-coding downstream 271211 8669016 ~ 8739984 (-)
G149075 NA non-coding downstream 436109 8573082 ~ 8575086 (-)
G149268 pygl,LOC104938237 non-coding upstream 343392 9361332 ~ 9363435 (-)
G149322 NA non-coding upstream 472329 9490269 ~ 9490806 (-)
G149324 NA non-coding upstream 476219 9494159 ~ 9496132 (-)
G149325 NA non-coding upstream 478293 9496233 ~ 9496585 (-)
G149326 LOC107379822 non-coding upstream 478907 9496847 ~ 9497214 (-)
G149011 NA other downstream 904356 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 1648503 7361222 ~ 7362692 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other downstream 2447890 6556705 ~ 6563305 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other downstream 2794754 6214005 ~ 6216441 (-)
AMCG00000189 NA other downstream 2801238 6207514 ~ 6209957 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other upstream 8400 9026340 ~ 9045855 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other upstream 152143 9170083 ~ 9188266 (-)
G149321 NA other upstream 469939 9487879 ~ 9488609 (-)
G149341 sos2 other upstream 522671 9540611 ~ 9541259 (-)
G149395 NA other upstream 738441 9756381 ~ 9766794 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_05406563_05413826 PSMC6 coding CI01000051 null 5406207 ~ 5413839 (-)