AMCG00000265


Basic Information

Item Value
gene id AMCG00000265
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8962968 ~ 8977588 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000265
ATGCCGATAGACAACATTGTGGACCTGTTCATCGTGCTCCAAGTGGCAGCCAGAGAGCGGGGCGAGCACAGAGCCAGGAGCCACAGGGCACAGGAGTgtcaggaggaggaggaggaagaggaagaagaagaggagcaGGAGACCCAGGAAGATACCGTAGACCAGATGGAAACCGAGGACGCACCAGAGACCAGGAGATCACGACTGAACCCATTTAGCAAAGGGTCCAGCTCACCTGAGAAGTCCTCTCCCAAGCCTTCTGTCATGGCCAGCAAAGAGGGACGTGTAAACCCTTTCAAGGTTTCTGGTGGTGTAAAGTCTTCAGGCTTCTCCACAGGGCAGCCACGTTTGACTAATGTCCTGGACAGCATGACCAAATGCAGCAGGAAGCCCTCCACTCCTGGCAGCTCGACAGCCAAACCAGACAAGTCTCCAGTGCTGAAGCCCCTGGTGCCAAAACCAAAGTCCAAGGTATTCAAAGAAATTTCAGGCAGTACTCAGACCACCTTGCTGCAGATGAGTGCCCATAAAGCTGCCAATAAAAAGCTGGGGGAAAAGGAGAAGGTGGCTGAAAAAGAGAGCAGTGTTGAGAAACAGCCCCCAGTCCAGGCAGTAGAAAACACGGAAAACAGGAAGCCAAAGACAGGGTTCCAGCTCTGGTTGGAGGAGAACCGCAAAGCCATTCTGGCTGAGAACCCCGACCTAGACGAGACTGATGTCGTCAAAGAGGCCATGGGCCGCTTCAGATCCCTGTCAGCAGATGATAGGATGtCCTTGACAGAGAGAGCTAAAGGAGGAAATTCGGGCGACTCTGCGGAGTTAAAGAAGCGAAAGCGCATTGAAGAGGAGAGTGAAGAGGCACAAACGAATGACAAGACTGAATTGAGTGAAAATAATGCCAAGAAGAAGAAGCCCCTGGACGCATCCTCCAAACTCTCTGCCTTTGCCTTCAACAAGAACTGA

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component
GO:0043596 nuclear replication fork cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0032993 protein-DNA complex cellular_component
GO:0005657 replication fork cellular_component
GO:0005694 chromosome cellular_component
GO:0030894 replisome cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03030 DNA replication
ko03410 Base excision repair
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000265 True 963 mRNA 0.52 8 8962968 8977588

Neighbor

gene id symbol gene type direction distance location
AMCG00000257 gch1 coding downstream 1593 8946663 ~ 8961375 (-)
AMCG00000241 bmp4 coding downstream 99017 8853219 ~ 8863951 (-)
AMCG00000243 NA coding downstream 148052 8788105 ~ 8814916 (-)
AMCG00000242 fermt2 coding downstream 191752 8751677 ~ 8771216 (-)
AMCG00000254 NA coding downstream 228420 8729285 ~ 8734548 (-)
AMCG00000262 NA coding upstream 36 8977624 ~ 8984923 (-)
AMCG00000264 NA coding upstream 10727 8988315 ~ 8989445 (-)
AMCG00000261 styx,LOC107680756,LOC107723651,LOC106602923 coding upstream 26943 9004531 ~ 9009477 (-)
AMCG00000263 psmc6,prs10,LOC107668141,LOC107582103,LOC107549540 coding upstream 33607 9011195 ~ 9017940 (-)
AMCG00000268 NA coding upstream 115502 9093090 ~ 9099477 (-)
G149132 NA non-coding downstream 17380 8882648 ~ 8945588 (-)
G149125 NA non-coding downstream 111189 8851316 ~ 8851779 (-)
G149087 NA non-coding downstream 218469 8743871 ~ 8744499 (-)
G149077 stxbp6 non-coding downstream 222984 8669016 ~ 8739984 (-)
G149075 NA non-coding downstream 387882 8573082 ~ 8575086 (-)
G149268 pygl,LOC104938237 non-coding upstream 383744 9361332 ~ 9363435 (-)
G149322 NA non-coding upstream 512681 9490269 ~ 9490806 (-)
G149324 NA non-coding upstream 516571 9494159 ~ 9496132 (-)
G149325 NA non-coding upstream 518645 9496233 ~ 9496585 (-)
G149326 LOC107379822 non-coding upstream 519259 9496847 ~ 9497214 (-)
G149011 NA other downstream 856129 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 1600276 7361222 ~ 7362692 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other downstream 2399663 6556705 ~ 6563305 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other downstream 2746527 6214005 ~ 6216441 (-)
AMCG00000189 NA other downstream 2753011 6207514 ~ 6209957 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other upstream 48752 9026340 ~ 9045855 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other upstream 192495 9170083 ~ 9188266 (-)
G149321 NA other upstream 510291 9487879 ~ 9488609 (-)
G149341 sos2 other upstream 563023 9540611 ~ 9541259 (-)
G149395 NA other upstream 778793 9756381 ~ 9766794 (-)

Expression


Co-expression Network