AMCG00000267


Basic Information

Item Value
gene id AMCG00000267
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9108437 ~ 9116668 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000267
TTAGAGCCGCGCAGAGCCGTCAGGATGCGCTAATGAGCCGAGCAGCGCACACTGCGCGCAACTGTGAAGTGAAGTGCGGGACGGGGCAGGACAgggcaggacaggacaggacagggcagtgcagggcagggcaggaCAGGGCAGGACAGGGCAGGACGTTAACAGGACTCACCGCCTCTGCGCTGTCCTGCACCATTTGATTCAGCTGTGCAGCAGAGGCATCACACCATGCCGTGCGAAAACGCGAGCCACGCTCTCAACCTCACGGGCAGCCCATACCACCACTCGGTGGTGAACAGCGTGCTGCTGGGCACAGTCGGGGTGGTGGGCAACCTGATCGCCCTGTGGATACTCTACCGACACAAGAGCACTGCCAGGAGCCAACACGTCTCCGTGTTTTACGTGCTGGTCACCGGCCTGGCGTGGACGGACCTGGTGGGCAAGGTGCTGCTGAGCCCCATGGTGGTCGTGTCCTACGCGCTGTCCCGCAGCCTGTGCAGCGTCAGCGGCGCGCTGTGCACCCTGTTCGCCGTGCTCATGTGCTTCTTCGGCTTGTGCTCCATGGGCATCCTGCTGGCCATGGCGCTGGAGTGTCTCCTGTCCATCGGACACCCCTACCTCTACCAGCAGCTCGTCACTAGGAGGAGGGCGCTGCTGATCCTGCTGGGCATCTACCTCTTCTGCCTGCTGGTCTGCCTGCTGCCCGTGGCCGGCTTTGGGAAATACAAGCAGTACAGTCCCGGGACGTGGTGCTTCATCGACATGAGCGCAAAGGACCCGGCGCACAAAGCCTTCTCCGTGCTGTACGCCACCCTGATCGGGGTGATGATCCTGGCCATCGTGGTCTGCAACGTCGTGGTCAAGATCAACCTGTTGAAGATGTACATACTGTCCCGCAGGCAGAAGAGCTGGACTGTTTCTTTCGAGGGGGCAGAGCAGAGGAACCAGTCTGCAGCCCCGCAGAGCCGGCACCCCGAGGAGCTGGACCACCTGGTCATCCTGGTGCTCATGACCCTGATCTTCATCGTCTGCTCCGTCCCCATCACGGTCCGCGCCTACATCAACGCTAACCGAAGTGATTCCAGTGATGAAAAGGCGGAGGTGTTGGACTTGATGGCCCTCCGATTCCTGTCCGTGAACTCCTGCGTCGATCCCTGGGTCTTCATCATCTTACGGACTTCCCTCTGCCGGGCACTTGTGCACAAGTTCTCCAGCAAAGTGTGCTTCACTCGGAACAGGCGCCCATCGTTGAAGACTCTGGAGGTGGTAGCGCCGCACATGACAACAATAACATAGAGCCATCACAACCGGAAAACAAGTATGGCACGtctaaaaacaatatacaagtgtgtgtgtgcgcatgtgcatatatataaataaacagagaaatCTTCAAACATGGAAGAAAGACAATTCTCTGAGGAAATCCTATTTATGAGTGATTCCATGAAATGCAGAGGACTGGGAGAGGGCAACTTGTAGACACAGTGGTTAACCAAGATCTGGCCTCTTTTTTATGTTGGGTAATACTTTTTGGAAAGAATAATAGAGAGAGGAAAGGGTGCAgccaaaaaaatgtgtttcagatgTTCCCTGGTATactatatgaaaagaaaaaatgttgaTCTTGGACTGAACATCGTAATCACAGGGTCTGATGAGaaatattagtttaatattGATCAAAGGAGTGACAGTTTTAGTTAAAATGTTTATGGTCCCAGAGAAACTAGATGAAGCTTTCAGAAGGTCCTGGTATTGATGCTAAAGACAGCTAACCACAACATATGATCTTATTCCTTAAATGTGTCTTAATTCACTATCTCTCAGACAGTCTTTTCCAGGTCCTAATAGACCCTGAGAGATCAAGTATTGTTATCCACTATGTACCATTATGTTCACCCTAGATTTGCTAGATCATTTGCCGATAACTTTCTACGCTGGCTCCTAAAAAGCAGCTCATAAAGCCGAACCCAAGAAACCGAACCCGTGAGAAAACTGCACAGGATCAATGGAAATACTTGACACAGTTAATGTTAGCCAGGAAATGTATAAAGGCAGAAGGATAAGAGGATTGTCTGAGGACTTACATCTGCCCTGACAACAGACGACGTTTACAGGCAGTAAAAATGCTATTGTACAGAAACATATTATAACATTCACTTCACTCCTATTGCACACAGAAAACTATTCCTTCGTCATTTAATACCTCTGAAAGTGGACATTGTTTACTTGGTTATTTCATGTGGTTCTGAACACTAAccattgtatatatttcaataatctTATACTCATACTCATGCAAGTATATCAAAAAGCACAGTTTGCAAACTCTACAGATAATGCACTCTGGGTGTTTAAAGGCATACTTTGTACAGATATGACATAACCTGACATTGGAATTCGCTTCAGTCGCTGCTGTTCAGCGGCTCTGTGTTAAGGTCTCCTCTGTGTTACCTGATGTATGCTTACTTAAGCAGTCAGTGTTTCAATGCACGGATATCATTAAAATCGAGCTTTTGTGTTCTTGATTTTATTGTTGGAGACAGAAGTATCAGAGTATTGTTATCGCACAAGTTAACCATGTTACAGCATgtgcttaaaataacatttttcctGAATGATGTTTTGAATTGATTGAGCTGTTCTGGATGTTTTGTTTGGGTCTGTTGCATATGTTTCTATTTGATGCTAATGTAACGATTTCTCGTTTGAGAAACTTTCAATTGGTCAGACCATTGCAAAGCACTTCCCTGCAAGCTATTGTCTTGGATCTGAAAAGCACAGGTTTCTCTTGCACTGATTCTCTTAGCCAATCCTTATTATGTCAGAGTGTaccgttgttgttgttgttgttgttgttgttgt

Function

GO: NA

KEGG:

id description
K04332 PTGDR; prostaglandin D2 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000267 True 2868 mRNA 0.48 2 9108437 9116668

Neighbor

gene id symbol gene type direction distance location
AMCG00000268 NA coding downstream 8960 9093090 ~ 9099477 (-)
AMCG00000263 psmc6,prs10,LOC107668141,LOC107582103,LOC107549540 coding downstream 90497 9011195 ~ 9017940 (-)
AMCG00000261 styx,LOC107680756,LOC107723651,LOC106602923 coding downstream 98960 9004531 ~ 9009477 (-)
AMCG00000264 NA coding downstream 118992 8988315 ~ 8989445 (-)
AMCG00000262 NA coding downstream 123514 8977624 ~ 8984923 (-)
AMCG00000269 cunh14orf166,zgc:56576,LOC107725214,LOC107680004,LOC107693089,LOC107583671 coding upstream 41192 9157860 ~ 9165637 (-)
AMCG00000272 frmd6,LOC102777289 coding upstream 77949 9194617 ~ 9210651 (-)
AMCG00000275 NA coding upstream 167690 9284358 ~ 9289212 (-)
AMCG00000276 NA coding upstream 247502 9364170 ~ 9370779 (-)
AMCG00000279 atl1 coding upstream 310831 9427499 ~ 9439336 (-)
G149132 NA non-coding downstream 162849 8882648 ~ 8945588 (-)
G149125 NA non-coding downstream 256658 8851316 ~ 8851779 (-)
G149087 NA non-coding downstream 363938 8743871 ~ 8744499 (-)
G149077 stxbp6 non-coding downstream 368453 8669016 ~ 8739984 (-)
G149075 NA non-coding downstream 533351 8573082 ~ 8575086 (-)
G149268 pygl,LOC104938237 non-coding upstream 244664 9361332 ~ 9363435 (-)
G149322 NA non-coding upstream 373601 9490269 ~ 9490806 (-)
G149324 NA non-coding upstream 377491 9494159 ~ 9496132 (-)
G149325 NA non-coding upstream 379565 9496233 ~ 9496585 (-)
G149326 LOC107379822 non-coding upstream 380179 9496847 ~ 9497214 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 62582 9026340 ~ 9045855 (-)
G149011 NA other downstream 1001598 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 1745745 7361222 ~ 7362692 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other downstream 2545132 6556705 ~ 6563305 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other downstream 2891996 6214005 ~ 6216441 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other upstream 53415 9170083 ~ 9188266 (-)
G149321 NA other upstream 371211 9487879 ~ 9488609 (-)
G149341 sos2 other upstream 423943 9540611 ~ 9541259 (-)
G149395 NA other upstream 639713 9756381 ~ 9766794 (-)
G149402 NA other upstream 715087 9831755 ~ 9832133 (-)

Expression


Co-expression Network