AMCG00000279 (atl1)


Basic Information

Item Value
gene id AMCG00000279
gene name atl1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9427499 ~ 9439336 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000279
TCCTCCCTTTGCTGAGAGCATCTTCACAACAAGAAGGGAGCCTCCTACGTCTACATGCACACTGACGGGGCTGCTATCCATCACACAGCGCAGGCACACGGAGGGCTCAAACAGGACTCACAGCACCATGGCTCGGAATCGCAAGGACAGGAATAGCTGGGCTGGGGGCTTCTCCGACAAGGGGGTGTACGACTGGAGCTCCGAGGAGGAGGAGCCGGCGGGCGGGGCAGAGCCGGTGCAGGTGCTGGTGGTGAAGGATGACCACTCGTTCGAGCTGGACGAGGCGGCGCTCAGCCGGATCCTCCTTCACGAGGCCGTGAGGGACAGGGAGGTGGTAGCCATCTCTGTGGCGGGAGCCTTCCGCAAGGGCAAGTCCTTCCTCATGGACTTCATGCTGCGCTACATGTACAACCAGGGCTCAGAGCAGTGGCTGGGGGCACCAGAAGATCCACTGACTGGCTTCTCCTGGAGGGGtgggtcagagagagagaccaccGGCATTCAGATCTGGAGTGAGGTCTTCCTGGTGGACAAGCCGGACGGCAGGAAGGTGGCAGTGTTGCTGATGGACACCCAGGGGACCTTTGACAGCCAGTCAACACTGAGAGACTCGGCTACCGTTTTTGCACTCAGTACCATGATCAGCTCCATGCAGGTGTACAACATATCTCAGAACGTGCAAGAGGACGATCTGCAGCACTTACAGCTTTTCACTGAGTATGGTAGACTAGCCATGGAGGAGACTTTCCTCAAGCCTTTCCAGTCGATGATATTTCTGGTCCGAGACTGGAGCTTCCCCTACGAGTTCCCTTACGGACAGGAAGGGGGCATGAAGTTCCTGGAGAAGAGGTTGAAGATCTCAGAGAACCAGCATGAGGAGCTGCAGAACGTGCGCAAACACATCCACTCCTGCTTCACCAACATCTCCTGCTTCCTCATGCCTCATCCAGGCCTCAAAGTCGCTACCAACCCCCACTTCGATGGCCGGCTCAAAGAGATCGATGGGGAGTTCATTAACAACCTGAAGGTGCTGGTCCCCTGGCTCCTCAGCCCACAGAACCTGGACATTAAGGAGATCAACGGCAACAACATCACCTGCCGGGGCCTTCTGGAGTACTTCAAGGCGTACATAAAGATCTACCAGGGCGAGGAGCTGCCTCATCCCAAGTCTATGCTGCAGGCCACCGCAGAAGCCAACAATCTGGCTGCTGTGGCAGCGGCCAAGGATctgtacaacaaaaaaatggaGGAGGTGTGCGGGGGGGACCGGCCCTTCCTGGCGCCCAGCGAGCTGCAGGCGCGGCACGGGGAGCTGAGAGAGGCAGCCCTGCAGCTGTTCCGCGGCGTCAAGAAGATGGGTGGCGAGGAGTTCAGCCGGCGCTacctgcagcagctggaggCCGAGATCGACGAGGTGTTCGTGCAGTACATCAAGCACAACGACTCCAAGAACATCTTCCACGCCGCCCGCACCCCCGCCACCCTCTTCGTGGTCATCTTTGTCATGTACGTGGTGGCCGGCGTCACAGGATTCGTGGGCGTGGACGTCATCGCCAGCCTGTGCAACATGATCCTGGGCCTGGCGCTCATCACGCTGTGCACCTGGGCCTACATCCGCTACTCTGGGGAGTACCGGGAGCTGGGGGCTGTGATCGACCAGGTGGCCGGAGCGCTGTGGGACCAGGGAAGCACTAATGAGGCTCTGTACAAACTTTACAGCGCTGCAGCCAGTCACAGGCACTTGTACCACCATGCATTTCCAAACCCACAGGCAGAGACCCAGGAGGAGTcggagaggaagaaaaactgACTGTGTGGAGCCGCAGCACTCAACACCGCGGGATCCGCTGCACCACTGGGGAGCATGACAGACAGAGCATAGAATCGTTACCTTTGGGCACTTCTACTATAATTTGATTGACTGGAACTGTCAGGCGATGCATACACTATAGCTAACGGGAGCAACGCGGGATTCCATACTCTGTAGCTAAATCGTACACCGGTGCAGAAGAGAGGTATGAAAATCCACGTATCGATGTGCTGTTTCCAACTTTTATTTATTCgatattttgtttctcaagtgaaacatctgtatatattcataacaaACAACACGAGACAGTGGAAATGCAGCAAAGTGTTTTAAATTGGGGTAAATTCTCAAGCTCTTATCGGTGGTTTAATTGGACATGATTCTTACATAAGTATAGAGGAATGATACCATCATTTGGGCAGGTCAATTTCAGCTGCAGTCCCAGAGGCCCATAAAATCCAGTCCATGCTCTTATTCTTTAGAAACAGAAACTAAACTATTTACGTACTGTATTTGCGCACtgattcttttattttactgcatagCCTATCCACCAATGCATTACTGGTAATGTGAAGAAGGaattgaatgtgaatgtgtatttttaaatcatatataaatgtacattatacatCATTTATTGAAATTGATTATAAATGAAGTGACTATTAATTCTGTGATCTgcagttattttctttgaaagattGTAGATTTGTTTAATATCTCCTGAAATACTGTTGCTTTGTAGTGAAGGGACAGGTATATATTCTTACGTTTGTATGTGAAAAGTACAATTTTAAGTGAAAGTACAAGTACACATTGTTTGTTGTCATAAATGAATaggtaaacatacattttaatgcccTGGAACCCTGGACACTAAGGTCTAGAGTTTACTCCAACTTAAATAACCCAGGCTGCACTTCAGCTGCCTTTCCCATAGAGGAGCGCCGTTGCGTATAGTAAAGTGGCATGTCTCTATGCTGTTACAATAGCTGCATTGTCTACTGGCGTCACTGGATGCGAGAAACGTTTTGAATGTGTTCGTCACATCTGTGCTTCTGCAACACGCATGACAGAGCAGTGTGGTCCAAACTGGTCAAAATAATGGACAGCAAAAACATGCTCAATGTGTGGGTTATAGCAATTTGGACCAAACTCAATGTAAAGCACAGACCTCAAACTGAGGGCCTGTTACAGAcgaggggagagagaaacaaatgcaCAGGAGGCCTGGGGATGGGTGGAAAGAAGGGAGGGAATCCAATCCAAATGGCCGAGTCACAGTAATTCATTAAGCGGACACATTGTCATTAAAATGGCACATTTCTGTTCAAAATGTTGGCAAAATCCACATTCATTTACACAACAAGAATTTTGAGAATGTGTGGGGAAAAAGATAATGCCTATTGAGAGGACACAGGGTTCTTCATTGTGAGAATAGTTTAACTGTGGAGATTCAAGAAATGGACCAAATGTTGTGGTCTAGGCTGAAGTTGTTGGACACACAACTGCACAGCTTTAGATTGACCTCCCAGGGTGTGGAAATACAAGCTCAGTTTGGTGTCAGCGAACCGGACCGGGGCGAGCACCGCCTCCCGCCTCCAAGTGTGACCACAGCCGGACGGGGCGGAAGTCTGCCCCTGTGGCTTCTCCTCGTAAAACAGTTGCTTGTGATGTTAGAAAGCttatgtatttgcaaatgtgtTGGCTTGGTGGAGTACTATTCGTAGAATGTACCATGCTGAACTTCAGGAGCTCCATCAGTTTCTTTTGCAGTTCATTATTcggaagaaaaaatgtattcatttcacTGTACAGCCAGTCTAATCTGCATAATTTACGCTTTTGAATCAATGCACAATGTAGCacgtgtttttttattttattttttaagatgttaTTGTAACTGGAGTTTTCAGAACCACTGACTAAGCAGGTGGTCCCACCAGGGTCTTACCAAAGAGGTTTATATTGTAACATTGAATCACTTATCTGAtgcttttaaaagaagaaatgaaCACACAGCAAAATGCTTTCCAGTCTACATTTATTGTCTTCCATGTTGTGTAATGTCACTATCCATAATGcactattataaatatttttattaaatgggaaaaaaaagcttccaCGTTTGTGTGAACACCTAGTATGTCTCCTCACTATTTGTGTCGTTTCACCCATTCATGAGATATACATTTAAGTACTGCAAAGCTGTCCCAGGCATTAGTGCACGCCAATCACCCAAGACCAGTTCACCACTGTAGTTCCTGCCTGGCAACTGAACATTACTTGACAAACAGTGTTCACTGCCAATGCCATTCATAACACCAAGTATCACTGAAATAGTCTCTGAATTTTAACCAAAGTAAGGATTTATTCCAGCCCAATTGCCACTACATCTTTTGCACAAGCCACATCTGAAGAGTATGTAGACAAGACCTGGCTAGGGCGGACTCCACAATAAACTGCTGAGATTTTCATGACATCATAACATTTAATACATGCCTCCAGGTTTCAGTAATAATGCAAAACAGGTGGCACTTGTTTAGAGAAATCAGGTATATGAATACAGGGGGTTGGGAGGGCTATAGCAAATGTGAGGTCAATGCCAAATTGATTACTGCAAACATTGCTGAACAGAAATGCATGAATTTCATTCCAGCATTTGCTCAACTTGGCACAGGTGATCAACATTATGAGCAAGACGTACTCTGCAAACTGCACAGCGAAATGTAATCAGTACTGAGTCCAGGCATGTTCTGTGTCAAATTAAGATGTTTATTATATAGTAAGGGCACACATTGATGATATTGCAAGATTTATTATGTTCATACACCATGTATATTGCACTAGAAGTATACAAGTCATAAATAAAGATCCTGTAGATACAACAGAACCTACTCTCCTCTTGCTTACTTaggttttaatttcaaaatgtgtttttttttttttttttttttttttt

Function

symbol description
atl1 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within axon guidance; determination of dorsal identity; and negative regulation of BMP signaling pathway. Located in late endosome. Is expressed in brain; primary motor neurons; and spinal cord neural tube. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D and hereditary spastic paraplegia 3A. Orthologous to human ATL1 (atlastin GTPase 1).

NR:

description
PREDICTED: atlastin-1 isoform X1

GO:

id name namespace
GO:0048263 determination of dorsal identity biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005770 late endosome cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17339 ATL; atlastin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000279 True 4784 mRNA 0.47 14 9427499 9439336

Neighbor

gene id symbol gene type direction distance location
AMCG00000276 NA coding downstream 56720 9364170 ~ 9370779 (-)
AMCG00000275 NA coding downstream 138287 9284358 ~ 9289212 (-)
AMCG00000272 frmd6,LOC102777289 coding downstream 216848 9194617 ~ 9210651 (-)
AMCG00000269 cunh14orf166,zgc:56576,LOC107725214,LOC107680004,LOC107693089,LOC107583671 coding downstream 261862 9157860 ~ 9165637 (-)
AMCG00000267 NA coding downstream 310831 9108437 ~ 9116668 (-)
AMCG00000289 NA coding upstream 59384 9498720 ~ 9501150 (-)
AMCG00000290 NA coding upstream 112906 9552242 ~ 9553191 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 124059 9563395 ~ 9570360 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding upstream 324279 9763615 ~ 9765768 (-)
AMCG00000309 NA coding upstream 481983 9921319 ~ 9925304 (-)
G149268 pygl,LOC104938237 non-coding downstream 64064 9361332 ~ 9363435 (-)
G149132 NA non-coding downstream 481911 8882648 ~ 8945588 (-)
G149125 NA non-coding downstream 575720 8851316 ~ 8851779 (-)
G149087 NA non-coding downstream 683000 8743871 ~ 8744499 (-)
G149077 stxbp6 non-coding downstream 687515 8669016 ~ 8739984 (-)
G149322 NA non-coding upstream 50933 9490269 ~ 9490806 (-)
G149324 NA non-coding upstream 54823 9494159 ~ 9496132 (-)
G149325 NA non-coding upstream 56897 9496233 ~ 9496585 (-)
G149326 LOC107379822 non-coding upstream 57511 9496847 ~ 9497214 (-)
G149332 NA non-coding upstream 70789 9510125 ~ 9511350 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 239233 9170083 ~ 9188266 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 381644 9026340 ~ 9045855 (-)
G149011 NA other downstream 1320660 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 2064807 7361222 ~ 7362692 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other downstream 2864194 6556705 ~ 6563305 (-)
G149321 NA other upstream 48543 9487879 ~ 9488609 (-)
G149341 sos2 other upstream 101275 9540611 ~ 9541259 (-)
G149395 NA other upstream 317045 9756381 ~ 9766794 (-)
G149402 NA other upstream 392419 9831755 ~ 9832133 (-)
G149441 NA other upstream 491634 9930970 ~ 9935550 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_05022143_05030697 ATL1 coding CI01000012 null 5021743 ~ 5030697 (-)