AMCG00000284 (ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726)


Basic Information

Item Value
gene id AMCG00000284
gene name ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9763615 ~ 9765768 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000284
ATGGTGGACCCTTCAGATGAAGAGGAAAAGGGCAAAACCGCTGATGCAGGGTCTGAGGGCTCGGGCTCGGCCTCAGCCCCCGAAGACCCCAAGGCCCCGAGCAGAAATGGAGCTGAGACTGAAGCAGAGAGCTCGGTCCCAGGCAGGCAGCGCGAGCAGTCACCGAAACTGCACCTGGATCTGTTCAACTTCGACTCGCGGGAAGCGGAAGGCAGCCGCTACGTCCTCACCAGTCCCCGCTCCCTGGAGGCCTGTGCCCGTTGCGGGGTCAAGCCAGTGCAGTTGCTGCCCCGATCCCTCAATGACTTTGCGAGAGATGCCCCAGGtcactccatgagggtggcagcGAGCCTGTTTGAGGTGTATGAGAGCGAGAGGCACGGCAAGCTCAAGCAGTGCCGGGAGGAACGTGAGAAAATCATCAGGGAGGAAAAGCGACGTATTTTGAACTCTGTTGCCAGCAGTGTGCCTCCGTCTCCCGGTAGACCCCCATCTGCAATTGCTGGGCCCAAGCCCCCCAAGAAAGTCACCCCCGCAGCCCCAAGCCCAGCCTTAAACACCACAGCTGCAGTCTCAAGTCCAGCCTTAAAAGCCACCCCTGCAGCCCTCAGTCCTTCCACAAAAGCAGCTCCTAACGTGATGCCTGTTTCAAATTCTTCAATGGCCAAAATTATAGCATCTGCTAATGGCGCCCCAATGACTCCTGCTTGTCAGACCAATGGACACGCGGCCAAGCCCAACGGTAAAGGGAAGAGCCATTCCATGGATTCGCTTCCAAAGAAGCGGGAAACATGTTCCTCCACTACGACCCGGACGTCTTCAGAGTCCGGGACCTCTTCCTTCAGCTGGGACAGTCCCCGGGAGAAGGACAAGTGGCTGAAGACGTCCAGCCCCCGGGCAAGGACGGTGGCCACCCTGAATTCCTTGATGGGCCGCAGCCTGAGCTTAGGAGACCTCAGCCACTCGCCGCAGACCACCAAGAAGGTGGAGAAGATCGTGAGGGAGGTAAAGCGGCGAGGGCTAAAGGAGGTGCCCGAGCGGGACCGCAAGATCGCCGCGCTGATGCTGGCCAAGCACCAGGAGGAGGACATCATGAGTCAGACCCGCTTTGTGGCCCACCTGCAGTGGGACAGTGAGCGGAGGCTGGAGGAGATGCGGCGCGAGCGGGAGGAGCGGGAGAAGCAGAGGGCCGTGCTGCAGTGCCAGCGGATGTGGCATACGCAGGTGGCCAGCCGACAGCGCCGTCTCAGCCAGGAGCAGCAGGACGCCGCGGCCATCAAGTTGCGGCAGGCAGCCGAGAGTGAGGAGAAGTGGAGGGAACTGGCTGAAAGGCAGGAACGCTCCCGGCAGGAGAAGCTGCGGCAGGCGGCCAAGGAGGAGAAACACAAGAAGAGCCACCAAGAGCAAAACCTCAAGGCACTGGAGGATGAACGGCAGGCCATGCTGGagcaggagctgctgctgctgcaggagaaGCTCACCATGGCCGAGCTGAAGAAGCAAGAGAAGGAGCATCAGGTGCAGAAGGAAAGGCGGGGGCTGAACCAGGCCGAGAAGATGAGGCACGGTGCCCTGATCAAGGAGATCGCCCGCAGGGAGGCTGAGGAGCGGGAGACAGCCAGGAGGTCCATGGAGGAACGACTGAGCAAATCGGTGGAGAACTACGAGCAGATCCAAGAGCGTCGTAATcaggagctgaaggagaaggCCCGGAAGGAGGAGCAGCAGATCCAGAAAGCACGGCGGGCAGCAGAGAAGAGGGAACGGCAACAAAAGGAGCACCTGGAGGCCCTGGCgaaggaggcagagaggaggacTCAGCAAGCAGCCCAAGTGGCTGAAGAGAGGGCCAAAGAGAAGGCCCTGAAAGCCATTCAGAGCCGGCGGGAAAAAGAGAAGATCCAGAGGCTGAACCGGCAGCGGGTAgaagaggaggagcagcagcgAAGGCAGGAGCTCCTGATGTCCATTGAGAAAAAGCTGGAGAAAAGCGAGCAGATCTTCCGCGAGAAGAGAGCCGTGCTGGAGAGCGCCCGCTCCGTTGCTCGGGCCTCTTTCCACGTCCGGGACCGTGTGCGTGAGGAGACCAACATGCGCACTTTTGACAAAATGGCACTGGAAGCACAATTGAAAGCCAGCCTGAATGAGAAATAA

Function

symbol description
ccdc177 Orthologous to human CCDC177 (coiled-coil domain containing 177).

NR:

description
PREDICTED: coiled-coil domain-containing protein 177

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000284 True 2154 mRNA 0.60 1 9763615 9765768

Neighbor

gene id symbol gene type direction distance location
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding downstream 193255 9563395 ~ 9570360 (-)
AMCG00000290 NA coding downstream 210424 9552242 ~ 9553191 (-)
AMCG00000289 NA coding downstream 262465 9498720 ~ 9501150 (-)
AMCG00000279 atl1 coding downstream 324279 9427499 ~ 9439336 (-)
AMCG00000276 NA coding downstream 392836 9364170 ~ 9370779 (-)
AMCG00000309 NA coding upstream 155551 9921319 ~ 9925304 (-)
AMCG00000312 plekhd1 coding upstream 176657 9942425 ~ 9955020 (-)
AMCG00000308 LOC101074829,LOC107664419 coding upstream 195126 9960894 ~ 9970582 (-)
AMCG00000310 rbm25,LOC103353665 coding upstream 207219 9972987 ~ 9997466 (-)
AMCG00000311 NA coding upstream 244368 10010136 ~ 10021096 (-)
G149391 NA non-coding downstream 16509 9744764 ~ 9747106 (-)
G149367 NA non-coding downstream 189484 9572134 ~ 9574131 (-)
G149346 NA non-coding downstream 218701 9544667 ~ 9544914 (-)
G149344 NA non-coding downstream 219585 9543587 ~ 9544030 (-)
G149343 sos2,LOC106611443 non-coding downstream 220839 9542512 ~ 9542776 (-)
G149414 NA non-coding upstream 128778 9894546 ~ 9897750 (-)
G149438 NA non-coding upstream 154144 9919912 ~ 9921022 (-)
G149532 NA non-coding upstream 828958 10594726 ~ 10594935 (-)
G149539 NA non-coding upstream 946709 10712477 ~ 10712681 (-)
G149567 NA non-coding upstream 1367633 11133401 ~ 11134191 (-)
G149341 sos2 other downstream 222356 9540611 ~ 9541259 (-)
G149321 NA other downstream 275006 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 575349 9170083 ~ 9188266 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 717760 9026340 ~ 9045855 (-)
G149011 NA other downstream 1656776 8095965 ~ 8106839 (-)
G149402 NA other upstream 65987 9831755 ~ 9832133 (-)
G149441 NA other upstream 165202 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 263959 10029727 ~ 10059000 (-)
AMCG00000334 NA other upstream 2021321 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 2074712 11840480 ~ 11847948 (-)

Expression


Co-expression Network