AMCG00000289


Basic Information

Item Value
gene id AMCG00000289
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9498720 ~ 9501150 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000289
TCCTGCTTCAAgctgacaacaaaaacaacctttGACAGTACATGATCTTTTTCAGGGTGAGGATATGAATCTTTTGCCAAAGGCTGCTCAATTAATCCTTGCTGCGCCGAAGACAGCTCCCCCACAAAACTGCAGACAGTTCTGGGGATGGCTGAATGCTGTGTTCAACAAAGTGGACTATGAGCGGATCAAAGCGGTGGGCCCTGACCGTGCCGCCGCCGAGTGGCTCCTGCGCTGCGGGGCAAAGGTGCGGTACCAGGGCTTCGACCGCTGGCAGCATGACTACAACGCCCTGCCGACGGGCCCCCTGGGCAGGTACAAGATCCAGGCCATTGATGCAGCCGAGTCCTGCATCATGTTCCGAGGATTCGACCACCTGGaTGGTTTGGAACATCTTCAAGAGATTAAGTTCAACAAGAATATCTACATAGAGGATGTGTGCCTGGAGAGACTGAGCAAAATCGAGAACCTTCAGTCCAGTCTGCGGCGGATGGAGGTGGTGTCCTGTGGCAATGTGACGGACCGAGGCATCCTCGCCCTGCATCACTTCGCGAATCTGGAGCACCTTTTCCTCAGTGACCTCCCTGGATTAAAGCAGAAAGACCGGACCGTCGAAACGCTGCAGACGGCTCTGCCTAAACTGGAGATTGAGCTGGACCTGGACTGACAGCCAGGGCTGGAGAGACTGAACAGCAAATACAACCcctgaatgttattttttgttgtgatACAAAAtaccatttataaaataatgaaagctAAAATAAGGAATTTAACTCCACTTTATTATAACCATTGTCAAAacctttaaatatttgtctgCTATTTTAGTTCTTAAAGATCTTAATAATTACTCCATAAAAAAGtacaacaatatataaacacaaatacatacatatatactgtatatatgtacatacacgtacatacagtgtgtttgtataaatacatgtgtggataaacatacatatataaacacaaacataagtCAGGCTAAGTGTCAATCGAAGTGTATCAGTTTAGACAGCGTTCAAATGGTTTTCAGAAGTTGGCTTTTGGGGGATCTGGAAGTGGGAGAGACAGAAATggctgtatatattattacacaCCCCAAATGTCTCTGTGTTGGTCTTGTTGATAAAACCCTGTAAATAGCTACTGTATTAAAAGTTGTATGAAAGGTAAAGAGGTTGGAGAGATTCTGTTAAAGAAttagtgcatGCATTTTATTTACTCTGACATCGTGCATTTTACCTTTTAACCTTTCAAAGTAGTTTGGCAAGTCTGTTCCGACCAAAAATCCCTCGCCTTAACAAATCCTGAAGTGTATTTTAGACGGTGCAAGAAATAATGCATTATGCCTCGTTTGTCCATCACTTAATTGCATTTAGagactttttgtgtgtgtgtggagaagtGCACTGGATCTAGAGATATCTTTCTCCCCTTCTCGGGCCTCCCACCATTCTCCGACCGTCGAATTTAGATGTCCagcaagaaaaggaaattaacatCAATgcgtacatttaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K07554 ATPeF0S, ATP5S; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000289 True 1543 mRNA 0.43 5 9498720 9501150

Neighbor

gene id symbol gene type direction distance location
AMCG00000279 atl1 coding downstream 59384 9427499 ~ 9439336 (-)
AMCG00000276 NA coding downstream 127941 9364170 ~ 9370779 (-)
AMCG00000275 NA coding downstream 209508 9284358 ~ 9289212 (-)
AMCG00000272 frmd6,LOC102777289 coding downstream 288069 9194617 ~ 9210651 (-)
AMCG00000269 cunh14orf166,zgc:56576,LOC107725214,LOC107680004,LOC107693089,LOC107583671 coding downstream 333083 9157860 ~ 9165637 (-)
AMCG00000290 NA coding upstream 51092 9552242 ~ 9553191 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 62245 9563395 ~ 9570360 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding upstream 262465 9763615 ~ 9765768 (-)
AMCG00000309 NA coding upstream 420169 9921319 ~ 9925304 (-)
AMCG00000312 plekhd1 coding upstream 441275 9942425 ~ 9955020 (-)
G149326 LOC107379822 non-coding downstream 1506 9496847 ~ 9497214 (-)
G149325 NA non-coding downstream 2135 9496233 ~ 9496585 (-)
G149324 NA non-coding downstream 2588 9494159 ~ 9496132 (-)
G149322 NA non-coding downstream 7914 9490269 ~ 9490806 (-)
G149268 pygl,LOC104938237 non-coding downstream 135285 9361332 ~ 9363435 (-)
G149332 NA non-coding upstream 8975 9510125 ~ 9511350 (-)
G149338 NA non-coding upstream 33564 9534714 ~ 9534919 (-)
G149339 NA non-coding upstream 35162 9536312 ~ 9536536 (-)
G149340 NA non-coding upstream 35679 9536829 ~ 9537094 (-)
G149343 sos2,LOC106611443 non-coding upstream 41362 9542512 ~ 9542776 (-)
G149321 NA other downstream 10111 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 310454 9170083 ~ 9188266 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other downstream 452865 9026340 ~ 9045855 (-)
G149011 NA other downstream 1391881 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 2136028 7361222 ~ 7362692 (-)
G149341 sos2 other upstream 39461 9540611 ~ 9541259 (-)
G149395 NA other upstream 255231 9756381 ~ 9766794 (-)
G149402 NA other upstream 330605 9831755 ~ 9832133 (-)
G149441 NA other upstream 429820 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 528577 10029727 ~ 10059000 (-)

Expression


Co-expression Network