AMCG00000296 (gphna,LOC107752769,LOC107657705)


Basic Information

Item Value
gene id AMCG00000296
gene name gphna,LOC107752769,LOC107657705
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10161709 ~ 10209228 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000296
gTCACAGTGCAGTTGACATTACCAAGGTGGCGCGAAGACACCGCATGTCTCCCTTCCCCTTAACCTCCATGGACAAAGCCTTCATCACTGTCCTGGAGATGACCCCCGTTCTTGGCACTGAAATTATCAACTATAGAGATGGAATGGGCCGGGTTCTTGCACAGGATGTGTATGCGAAAGACAACCTGCCCCCTTTCCCGGCTTCAGTCAAGGATGGATACGCAGTCCGAGCTGCTGATGGTCCAGGAGATCGTTTTATAATCGGAGAATCTCAGGCTGGTGAGCAGcccacCCACACCGTAATGCCAGGCCAGGTGATGCGGGTGACAACCGGAGCCCCCATCCCCTGTGGTGCGGACGCTGTGGTGCAGGTGGAGGACACCGAGCTCATCAGGGAATCAGAAGACGGTACAGAGGAGCTGGAGGTTCGAATTTTGGTGCAAGCTCGACCAGGGCAGGACATAAGACCCATAGGCCATGACATTAAAAGAGGAGAGTGTGTGCTGGCAAAGGGCACCCACATGGGGCCTTCAGAAATTGGTCTCCTAGCAACGGTGGGAGTCACAGAAGTGGAAGTCCAGAAATTTCCAGTGGTTGCAGTGATGTCAACAGGGAATGAGCTGTTGAACCCAGAAGATGATCTGCACCCTGGGAAGATACGAGACAGCAACCGGTCCACACTTCTGGCCACTATACAAGAGCATGGCTACCCCACCATCAATCTGGGTATCGTCGGAGACAACCCTGACGATCTGCTTAATGCTCTTAATGAAGGGATCAGTCGTGCGGATGTCATCATAACATCAGGAGGCGTTTCAATGGGAGAAAAGGATTACCTGAAGCAAGTGCTGGATATCGACCTCCACGCCCAGATCCACTTTGGGAGAGTTTTTATGAAACCAGGtctcCCAACAACCTTTGCCACCTTGGACATCGATGGTGCTAGAAAATTAATCTTTGCCCTGCCagGTAATTTCAGCTTCAGAGACACAGGCTCCACCCTCCTTGAAACCTGCTTGCCACCACTTGACTCTGAGCCAAGCAAGCAAACTCCCACTGCTACACGTGGAAGTAACCCAGTGTCCGCTGTGGTCACTTGTAATCTCTTTGTTATTCCTGCGCTGAGGAAAATGCAGGGGATTTTGGACCCCAGGCCAACCATTATCAAAGCCAGATTATCCTGTGACGTAAAGCTGGACCCCCGTCCTGAATATCATCGCTGCATATTGACCTGGCATCACCAGGAACCACTGCCATGGGCACAAAGTACAGggAACCAGATGAGCAGTCGACTGATGAGTATGCGCAGTGCGAACGGACTGTTGATGCTACCTCCAAAAACAGAGCAGTATGTGGAACTCCACAAGGGGGAGGTGGTGGACGTCATGGTGATCGGCCGACTA

Function

symbol description
gphna Predicted to enable molybdopterin molybdotransferase activity. Acts upstream of or within glycine receptor clustering. Predicted to be active in several cellular components, including dendrite; postsynaptic membrane; and postsynaptic specialization. Is expressed in head; myotome; rhombomere; spinal cord; and spinal cord interneuron. Human ortholog(s) of this gene implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C. Orthologous to human GPHN (gephyrin).

NR:

description
gephyrin isoform X7

GO: NA

KEGG:

id description
K15376 GPHN; gephyrin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000296 True 1403 mRNA 0.52 14 10161709 10209228

Neighbor

gene id symbol gene type direction distance location
AMCG00000299 NA coding downstream 33753 10125262 ~ 10127956 (-)
AMCG00000301 mpp5,LOC107657730,LOC107752770,LOC105026062,LOC107592802,LOC106611266 coding downstream 46899 10104501 ~ 10114810 (-)
AMCG00000298 eif2s1,eif2s1b coding downstream 70891 10083307 ~ 10090818 (-)
AMCG00000302 NA coding downstream 84144 10073813 ~ 10077565 (-)
AMCG00000303 NA coding downstream 133396 10025629 ~ 10028313 (-)
AMCG00000295 LOC108443923,LOC108270253 coding upstream 69581 10278809 ~ 10293472 (-)
AMCG00000316 LOC106571665 coding upstream 570882 10780110 ~ 10783723 (-)
AMCG00000317 LOC107733188,LOC106611223,LOC106602554,LOC108433921,LOC108270174 coding upstream 605756 10814984 ~ 10826988 (-)
AMCG00000318 NA coding upstream 649527 10858755 ~ 10861525 (-)
AMCG00000319 NA coding upstream 998221 11207449 ~ 11210136 (-)
G149438 NA non-coding downstream 240687 9919912 ~ 9921022 (-)
G149414 NA non-coding downstream 263959 9894546 ~ 9897750 (-)
G149391 NA non-coding downstream 414603 9744764 ~ 9747106 (-)
G149367 NA non-coding downstream 587578 9572134 ~ 9574131 (-)
G149346 NA non-coding downstream 616795 9544667 ~ 9544914 (-)
G149532 NA non-coding upstream 385498 10594726 ~ 10594935 (-)
G149539 NA non-coding upstream 503249 10712477 ~ 10712681 (-)
G149567 NA non-coding upstream 924173 11133401 ~ 11134191 (-)
G149573 NA non-coding upstream 966453 11175681 ~ 11176066 (-)
G149596 NA non-coding upstream 1129163 11338391 ~ 11368231 (-)
AMCG00000300 NA other downstream 102709 10029727 ~ 10059000 (-)
G149441 NA other downstream 226159 9930970 ~ 9935550 (-)
G149402 NA other downstream 329576 9831755 ~ 9832133 (-)
G149395 NA other downstream 394915 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 620450 9540611 ~ 9541259 (-)
AMCG00000334 NA other upstream 1577861 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 1631252 11840480 ~ 11847948 (-)
G149751 NA other upstream 1872315 12081543 ~ 12083214 (-)
G149847 NA other upstream 2313292 12522520 ~ 12542310 (-)
G150138 NA other upstream 3614726 13823954 ~ 13826709 (-)

Expression


Co-expression Network