AMCG00000301 (mpp5,LOC107657730,LOC107752770,LOC105026062,LOC107592802,LOC106611266)


Basic Information

Item Value
gene id AMCG00000301
gene name mpp5,LOC107657730,LOC107752770,LOC105026062,LOC107592802,LOC106611266
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10104501 ~ 10114810 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000301
ATGAACAATGCCTTGACCTTGACCCTGTCTTGTCCTTTCctccaggccctgatgcaggCCCATGACCAGGTGGCGGAGCAGGAGATGCAGCCCGAGCCGGTGCCCATGGAGGAAGGGCCCTACGAGACGGTGACACAGTACGGCGGGGAGACGGTGAAGGTCGTTCGCATTGAGAAGGCTAGGGACATTCCACTGGGTGCAACAGTGCGTAATGACATGGACTCTGTGATCATCAGCCGCATCGTGAAGGGGGGCGCAGCGGAGAAGAGCGGCCTGCTCCATGAGGGAGACGAGATCCTGGAGATCAATGGTATTGAGATTCGGGGAAAGGACGTCAACGAGGTCTTTGACATACTGgCTGATATGCATGGCACGCTGACGTTTGTGCTCATTCCCAGCCAGCAGACGAAGCCTCCCCCCATCAAAGAGACGGTGGTCCATGTCAAAGCTCACTTCGATTATGACCCCTCTGATGACCCCTATGTGCCATGTCGAGAGCTGGGCCTGTGTTTCCAGAAAGGGGACATCCTGCATGTTATCAGCCAGGAAGATCCCAACTGGTGGCAGGCTTACCGGGATGGCGATGAGGACAATCAGCCTCTGGCCGGCCTTGTTCCAGGGAAGCTTTGGTGTGcaaaaaagaacaagaagaagCGGAAGAAGATATTGTACAATGCTAATAAAAACGATGATTATGACAACGAAGAGATCCTTACCTATGAGGAAATGGCTCTTTACCACCAACCAGCCAATAGGAAAAGGCCAATTGCGCTGATCGGACCTCCTAACTGCGGGCAGAACGAGCTGCGGCAGAGACTGATGGCGAACGAACCCGAGCGCTTTGCTGCTGCAGTCCCACATACAACGCGGAACCGGCGTGACATTGAAGTCAACGGCCGGGACTACCACTTCATTTCCCGGCAAGCCTTTGAGACGGATGTGGCCGCTGGCAAATTCATTGAGTCGGGGGAGTTTGAGAAGAACCTGTATGGCACCTCCACCGACTCTGTGAGACAGCTCATCAATACTGGGAAGATCTGCCTACTGAGTCTGCACACACAGTCTCTGAAGGTTCTTCGGAGCTCTGACCTGAAACCCTACATCATCTTCATTGCCCCCCCAAATCAAGAAAGGCTCCGGGCATTGCTGGCCAAAGAAGGGAAGAATCCCAAGCCTGAGGAACTGCGAGACATCATCGAGAAGGCCAGGGAGATGGAGCAGAACTATGGGCATCTTTTCGATGCAGCCATTGTCAACACAGACCAAGACAAGGCCTACCAGGAGCTCTTGCGGCTCATTAACAAGCTGGACACAGAGCCACAGTGGGTCCCCTCCTCCTGGCTGCGCTAG

Function

symbol description
mpp5 MAGUK p55 subfamily member 5

NR:

description
PREDICTED: MAGUK p55 subfamily member 5-A

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0045176 apical protein localization biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0001841 neural tube formation biological_process
GO:0021744 dorsal motor nucleus of vagus nerve development biological_process
GO:0048699 generation of neurons biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0016332 establishment or maintenance of polarity of embryonic epithelium biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0005634 nucleus cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0016324 apical plasma membrane cellular_component

KEGG:

id description
K06091 MPP5, PALS1; MAGUK p55 subfamily member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000301 True 1350 mRNA 0.54 9 10104501 10114810

Neighbor

gene id symbol gene type direction distance location
AMCG00000298 eif2s1,eif2s1b coding downstream 13683 10083307 ~ 10090818 (-)
AMCG00000302 NA coding downstream 26936 10073813 ~ 10077565 (-)
AMCG00000303 NA coding downstream 76188 10025629 ~ 10028313 (-)
AMCG00000311 NA coding downstream 83405 10010136 ~ 10021096 (-)
AMCG00000310 rbm25,LOC103353665 coding downstream 107035 9972987 ~ 9997466 (-)
AMCG00000299 NA coding upstream 10452 10125262 ~ 10127956 (-)
AMCG00000296 gphna,LOC107752769,LOC107657705 coding upstream 46899 10161709 ~ 10209228 (-)
AMCG00000295 LOC108443923,LOC108270253 coding upstream 163999 10278809 ~ 10293472 (-)
AMCG00000316 LOC106571665 coding upstream 665300 10780110 ~ 10783723 (-)
AMCG00000317 LOC107733188,LOC106611223,LOC106602554,LOC108433921,LOC108270174 coding upstream 700174 10814984 ~ 10826988 (-)
G149438 NA non-coding downstream 183479 9919912 ~ 9921022 (-)
G149414 NA non-coding downstream 206751 9894546 ~ 9897750 (-)
G149391 NA non-coding downstream 357395 9744764 ~ 9747106 (-)
G149367 NA non-coding downstream 530370 9572134 ~ 9574131 (-)
G149346 NA non-coding downstream 559587 9544667 ~ 9544914 (-)
G149532 NA non-coding upstream 479916 10594726 ~ 10594935 (-)
G149539 NA non-coding upstream 597667 10712477 ~ 10712681 (-)
G149567 NA non-coding upstream 1018591 11133401 ~ 11134191 (-)
G149573 NA non-coding upstream 1060871 11175681 ~ 11176066 (-)
G149596 NA non-coding upstream 1223581 11338391 ~ 11368231 (-)
AMCG00000300 NA other downstream 45501 10029727 ~ 10059000 (-)
G149441 NA other downstream 168951 9930970 ~ 9935550 (-)
G149402 NA other downstream 272368 9831755 ~ 9832133 (-)
G149395 NA other downstream 337707 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 563242 9540611 ~ 9541259 (-)
AMCG00000334 NA other upstream 1672279 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 1725670 11840480 ~ 11847948 (-)
G149751 NA other upstream 1966733 12081543 ~ 12083214 (-)
G149847 NA other upstream 2407710 12522520 ~ 12542310 (-)
G150138 NA other upstream 3709144 13823954 ~ 13826709 (-)

Expression


Co-expression Network