AMCG00000309


Basic Information

Item Value
gene id AMCG00000309
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9921319 ~ 9925304 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000309
ATGAAGCCCACCGCTCGgatcctgctgctgctgctcctggaCTGCTTGACTGATGTGCAACCCCAGGCCACCAAGGATGTCCCAGCATGCAGCAGTGGACAGGAGACTTGCCCCGCTAATATCTGTGCTGAACTGAGAGAGCTGAGAGCCACGATGGAGGAAATGAAGAGACTGATCCAAGGCATGCCGAAGGTGGCATTCTCTGCTTTCTTATATGATTCCAAAACGGCTGTGTCACAAACTGGACCCTTCAATACGGAGATCACCTTGGTCTACAAAAACCTCTTCACAAACATCGGCAACGCTTACAACCCCACTACAGGTATCTTCACAGCACCAGTGAAAGGAGTCTACGACTTTAGCTTCTCTGCATTCAAAAATAGCGGAGAAGTCATGGGTGTAATGCTGTATAAGAATGGCAAACGTATTGTGATTGTTTATGATAATAATCCTCAAGACACGCAAGACTCTGGATCCAACAGAGCCGTCCTGCAGCTGGACGTGGGAGATCAGGTCTACCTCCGTCTTTATCCCAACGCTCAAATTTATGATAATGAGAATAACTTCAACACATTCACCGGAGTCCTGCTCTTCCCAATGtgaagatacacacacacacacaactggcATCACATGGAAATATAATCCAGTGTATGTAAACCTCTGGCAACAACTGTACATCTGCTGTCAGCTAAAAAAAGTGGATTAGTTAGATTTGGATTTGTGATACTTTGTATACCAGGGtgcaaattgtgtgttttgggtaatatgtatataataaatacaagttaaaaacagaaacctaTATTCAGCACAATACTTAAACTGGTGGGGaacaaaacatacttttttttttaaatgctggggagttttaatgtatgcaaaacacaaaccaagtAAAAGGCCACTTATGGTTttaataatactataaataatataaaagttcAGAGCAGGTTAACATCTGGTTAAAGGTTTAGTAGGTTATTTTTGGTTAACctgcagcattttaaatcactgcttagagatgggtttttgttttctactttgCCAACATTTCACTTTACTCACTacaaatacatatgcatatacatacacatacacacacacacacatttaccaGATGTTCTGTAAATTTGGGTAGCTGGGACACTCGTAAGCAAATATAGGAAACAATGCAGAGGAGAGGGAATTTCTGTAAAGACATAGTTCATGCTTATCCTTGAAGGGGTCATAATGGCGTAGGAAGGGTTGAGGAAGTCCACTTTGCACTTTTCACTACTGAATGACTTGGTAAATAGCTAATACAAAGGTACTACCAAAAAGTGTGTAGAGCAATCCAACATCAATGCAATGCTGAGTTGTTCAGAGATCAGAACAAGCAAACCAAGAGATGTGGCATATGGGaatgaaataaaactgtcaAATCCTCAAAACCTCAAAACCTGAATACAATTATATGTTTATCAATGTTCTGATTAAACAACAAATGTGAATCACATTCAAGATCATTGTGCTCGATGTAAATCGGCTCAGTTTTTGTCGCCGCTCTAGGTTAAGCTGAAAAACATCCTGCTTAGCACAGAAGCACGCTGCATTGTCAGACAGCTGCAGTCACATTCAAAGAGTTTCCTTTCTTTGCAGGGAATTGTCCCTGCAACTCTTTCTCCATTGATATCTGACTGACATCACAATGCACTGTGAGCTCCAGGTTCTGGCATCTCTCCGAGAGCAGTTCAGAGACATACTAAATCCAGATTCAATGGTGACATCTGGAACCTGCTCAACTGCAAGacctgaaaaataataacacagacaTAGCAGATCACAGACTTGAAGGAATTAAGGCAATCTCTATACATTTAGCACAGAAgtcataattaaatatgcatgttgagggttataaataaaaaacaaaaacattcttatCTTGCTGTTGTGGTTGAATTTAATCATTATATGATAATACTCTTCTTCATTTTTAAGAGCATCCTAACATGTCTTGGATGTACCAACATTGTGCACTGACGGTCCAGACGTTTACTGACACAATAACCGTTACAATTACAATCTCATATTGTTACTTTAAATCAtactaatataataaatatcacAGATTAATGTAtgcgtttgtttattttaaggattTGTTCATCAAAGTAGCTACAAATGGGAACCGCAGGGAGCATTTTCCTATGTATcaaatgtggaaatgtgttgcctacatatttataatgcatcTCTGAATACAAATAAGGAACTTCTGTGCATAATAGAAACTAATGCGATTTAATAAGAGCAAAACCACATTCAACAGATGGGCCAGATCTATTTCATAGACAAACAAATTCTTTATTGTctgaaaaactgtgaaataaattGTGTCCTGTAGACCAGAGCACTGAAGTTCTtgcataggaaaaaaaaaa

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000309 True 2426 mRNA 0.39 3 9921319 9925304

Neighbor

gene id symbol gene type direction distance location
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding downstream 155551 9763615 ~ 9765768 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding downstream 350959 9563395 ~ 9570360 (-)
AMCG00000290 NA coding downstream 368128 9552242 ~ 9553191 (-)
AMCG00000289 NA coding downstream 420169 9498720 ~ 9501150 (-)
AMCG00000279 atl1 coding downstream 481983 9427499 ~ 9439336 (-)
AMCG00000312 plekhd1 coding upstream 17121 9942425 ~ 9955020 (-)
AMCG00000308 LOC101074829,LOC107664419 coding upstream 35590 9960894 ~ 9970582 (-)
AMCG00000310 rbm25,LOC103353665 coding upstream 47683 9972987 ~ 9997466 (-)
AMCG00000311 NA coding upstream 84832 10010136 ~ 10021096 (-)
AMCG00000303 NA coding upstream 100325 10025629 ~ 10028313 (-)
G149438 NA non-coding downstream 297 9919912 ~ 9921022 (-)
G149414 NA non-coding downstream 23569 9894546 ~ 9897750 (-)
G149391 NA non-coding downstream 174213 9744764 ~ 9747106 (-)
G149367 NA non-coding downstream 347188 9572134 ~ 9574131 (-)
G149346 NA non-coding downstream 376405 9544667 ~ 9544914 (-)
G149532 NA non-coding upstream 669422 10594726 ~ 10594935 (-)
G149539 NA non-coding upstream 787173 10712477 ~ 10712681 (-)
G149567 NA non-coding upstream 1208097 11133401 ~ 11134191 (-)
G149573 NA non-coding upstream 1250377 11175681 ~ 11176066 (-)
G149596 NA non-coding upstream 1413087 11338391 ~ 11368231 (-)
G149402 NA other downstream 89186 9831755 ~ 9832133 (-)
G149395 NA other downstream 154525 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 380060 9540611 ~ 9541259 (-)
G149321 NA other downstream 432710 9487879 ~ 9488609 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other downstream 733053 9170083 ~ 9188266 (-)
G149441 NA other upstream 5666 9930970 ~ 9935550 (-)
AMCG00000300 NA other upstream 104423 10029727 ~ 10059000 (-)
AMCG00000334 NA other upstream 1861785 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 1915176 11840480 ~ 11847948 (-)
G149751 NA other upstream 2156239 12081543 ~ 12083214 (-)

Expression


Co-expression Network