AMCG00000310 (rbm25,LOC103353665)


Basic Information

Item Value
gene id AMCG00000310
gene name rbm25,LOC103353665
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9972987 ~ 9997466 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000310
TGTTGTCTTGTTGCTTGACtgtgagacagagaggcagacggctaaaataaaaaaaaaagtgttacattTGTAGGCCGAAACGcatattataatcaataaacCGCCTGGTTTCGGGGGGCTCTAGTGGGGATCGATCTAAGGAGAATACCGGAAAGTAGAGGTACTTAGATGGAACCAGAGACTGCCTCCATGCTATTCAGGCTGAGGTCTGGACAGATCCAGgtTGGTGCCATACAGAAAATGTCTTTCCCCCCGCACCTCAATCGCCCGCAACTTGGCATCCCACCCCTTCCTCCAGGCATCCCCCCTCCTCAGTTTGCAGGATTCCCTCCAACTGTACCTCCTGGAACACCAATGATTCCAGTTCACATGGGCATTATGACTCCTGCTCCTACTGTCCTTGTCCCGACGTCTGTGCCCATGGTGGGGAAACCAATGGGTCCCAGAAAAGATTTCCCAGGGGTGAGAAACAAGGAAAATGATGACAGCGGGGGACCCACAACTACAGTCTTTGTaggaaacatttcagaaaaagccTCGGACATGCTCATCAGACAGCTGTTAGCAaaatgtggcTTGGTTCTAAGTTGGAAGAGGGTTCAGGGAGCTTCTGGAAAACTccaagCATTTGGCTTCTGTGAGTACAAGGAACCAGAGTCAACTTTACGAGCACTACGGCTGCTCCATGAACTGCAGATTGGTGACAAGAAATTGCTGGTGAAAGTAGATGCCAAAACTAAAGCCCAGCTGGATGAGTGGAAGGCCAAGAAAAGAAGTTCCAATGGGGTGTGTATGAATGCAAAACCAAACGACAAcgcagaggaggaagaggagcttGATGACGAGACAAAGCGACGGGACCAAATAGTGAAGGGAGCCATCGAGGGGCTCATCCGGGAATACTCGAGTGAACTCAACGCACCCTCTCAGGAGGCAGACACCCACcacagaaaaaagaagaaggaaaagaaggaaGATGAGGATATAAATGCAATAGAAATGGAAGAAGATAAAAGAGACCTGATTTCAAGAGAGATCAGTAAattcagagacacacacaagAAACTGGAAGAGGAGAAggggaagaaggagaaggaacGACAAGAgattgaaagagagagacgggagagagagaaagagagagaacggGAGAGAGAACGACGTGaccgggagagagagaaggaacgggagagagagagggagaaggaaagagaaaaagagcgagagagggaaagggagagagatcgGGATCGGGAGAGGACCAAGGACAAGGAGAGGGAACGAGAGCGAGAACGAGAGAAAGAACGCAGTCGAGACCGGAGCAAGGACCGCAGCAGATCTCGCGAGAAGAGTCGTGACCGAGATAAAGACAAGAAACGGGACCGAGAGGAAGATGAAGAGGAGGCTTATGAGCGAAGGAAACTGGAAAGAAAATTGCGTGAAAAGGAAGCAGCTTACCAGGAGCGTTTGAAAAACTGGGAGATCAGAGAGCGCAAGAAAGCCCGGGAGTATGCAAAGGAATctgagagggaggaagagaggaggcGCGAAACGGCCAAAGAAGCTAAAAGGCTGAAGGAGTTCTTGGAAGACTATGATGATGATAGAGATGATCCAAAATATTATAGGGGAAGTGCTCTTCAGAAAAGATTGCGAGACCGAGAGAAGGAGATGGAAGCAGATGAGCGAGACCGGAAGCGGGAGAAGGAGGAGCTAGAAGAGATCAGACAGCGACTCCTGGCGGAGGGGCACCCAGATCCCGATGCAGAATTGCAGAGGATGGAGCAGGAAGCAGAGAGACGCAGACAACCCCCCATGAAGCAGGAACCAGAATCGGAGGAGGAAGTGGAAGAGGAAAAGCCTCCAAAGGAAGAGAGGCGGGAGGATATTGAACCTGAGCCTCAGTCTGAGGATGAAGTTGAGGaaggcgaggaggaggaggaggaagatgatgAGCCCCTTGAGTCCAAACCCTGCCTCAAGCCCACACTTAGGCCTATCAGTTCTGCCCCCTCAGTGTCTTCTGGCAGCTGCAATGCTTCTCCCAACACCCCTGGGGATGAGTCCCCCTGCGGCATCATCATTCCCCACGAGAACTCGCCAGAGGCGGCTCCACAGGAGGAACTGAGGCCCAAGATAGGACTCAGCCTCAAACTGGGATCCTCAACCAGCCCGAGTCAGCCTAATGCTGGCAAGAGGAAGAAACTGGCGGTGGACAGTGTGTTCAACAAATTTGATGATGAGGAGAGTGATGAAATCCCCCGCAAGAGGAAGCTTGTGCCTCTGGACTATGGGGAGGATGAGAAGGGGTCCACTAAGGGCAATGTTAACACAGAAGAGAAGCGAAAGCACATCAAGAGCTTAATAGAAAAGATCCCCACTGCCAAACCAGAGCTGTTCTCATACCCTCTGGACTGGTCCATTGTAGACACGACACTAATGGAGCGTCGAATCAGGCCATGGATCAATAAGAAGATTATTGAGTACATTGGAGAGGAGGAGGCTACTTTAGTGGACTTTGTTTGTTCAAAGGTCATGGCTCACAGTACACCCCAGGGCATTCTAGATGATGTTGCTATGgTACTTGATGAGGAAGCGGAAGTCTTCATAGTGAAAATGTGGAGGTTGTTAATATATGAAACAGAAGCAAAGAAGATTGGACTGGTGAAATAAAAGTACTGAAGGGGAATAAggaaacaaacttttttttttagttggcTTTCTTTCTATCCACTCTTCAGACCAGCCGACTCCTATCCTATGTTTCATAAAAGTATAAGGAGGGCTCTCgatttttaaaagcaagatTGTTGTAAAGTTACTTCTTCCATTTTTGTTCACTTGTTCCTTTCTACTAGAGacaattgtacattttacaggACTGCATTTTTGTGCGCACTAATTTCAGTGTGCACAGATGAACAACTGGTGTCCGCATGGCCaaactttaatttcagaatcTTGTCGCTAAGTGGCTCAAAATGCTGGAGCACAaggtagcattttttttttttttttttttgcttcatgtCAACCTTCAGTCAAATGTCTAAGTTtataaatgtgtctgtgtgaagtAATACTCTGGTCATTTTGATATGATTCTGGTCCAGGGATCCATAAAATCTAAATAACTTGTAGCATACAAGTCaattaaactgtaatatattgtCTAACAATACAGTTGCAATATTTCAGTACAGAATTTGTCCAAGCTAGCTTAAAATCTGTGTATAGCAGACTTTTCATGAGAATTctaatttcttacattttttttttttttgattatGAGAACATTGGGGAGAATCTTGGATGTTCGTTGCTGAAACTCAGACATTTTAGTATTCTGAGCTGATCCTCTTGCTTTAAAACTGCTTGAATCTCTGTAAGGTTTGCTAAATTAAACTTACTTTTTAAATGGCGTTCAGTTCTATGAAGTCTACTGATAATGTTCACATCTGGGGTTCCTGCATTTGTATTCTTTCAGTCTGTCTAATTAATGCCAGCATCACAGTGGTAGACTTGCATTTTGCCTCACAGCTTTGGGTATTTCTAACTGTTCCTTAAAAAACAGGACCTACTGTAGATTTCTGTTGCTAGTACACTGGAGAGATTCTTCAATTTAAGAATAGATCAGTGCATTTTTTATGTAGTTTCTGCATTATCACTGGTGTATGTATTGGCTATTTAATTAggtaattattttaagtttaggTCCTTTATTATATATCTTATCTGTCCATGACTGTTTGGCAtatataagaaaagaaaatattttctcttatttgtccatttttttgttgtagatTTGAGGAAGTGACATTTTAGGGAAATCTGTTTACCCTTTTTGTACTGCCcaccattttttgtttgttttaaataaacatatttttggaTAGTATAACTTCTGAAATGTTCAATCTTTAATTTTGCTATAGTTAATGGTTGTTGCAGATACTGCTAAACATCCATCTCTCATAGATAGAGGGGAGACTTCATGATGATTTCCCCCTTGTTGTAATACAATAAGTCAGgcaagtattttgttttcagcaggtctatataatacaaaactaGACTTTTCACAATTACAAATAAGTAAGATCTTATCCCAGGCTTTTTGGGGGGGTATTTCTGTTTCTGATCTGTTATTTCCTGATAGACTTGTAGTCAGGTCGCTATAGAGTCGCCATAGTTCAATTACGACTGAATCACTATGATCCGAGTGCTTGATTTTCAAGCCTCAAATCTAAAGTTGAACTTAACTAATGAACACCACTTATAATTCAGAGAGCCCACATTTCCCAGGTTTTTCCATATCTTTatcttcttttgttttaatagaacATTATcgaaatgacaaataaaa

Function

symbol description
rbm25 Enables mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome and regulation of apoptotic process. Located in nuclear speck.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 25-like

GO: NA

KEGG:

id description
K12822 RBM25, S164; RNA-binding protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000310 True 4369 mRNA 0.43 19 9972987 9997466

Neighbor

gene id symbol gene type direction distance location
AMCG00000308 LOC101074829,LOC107664419 coding downstream 2405 9960894 ~ 9970582 (-)
AMCG00000312 plekhd1 coding downstream 17967 9942425 ~ 9955020 (-)
AMCG00000309 NA coding downstream 47683 9921319 ~ 9925304 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding downstream 207219 9763615 ~ 9765768 (-)
AMCG00000291 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding downstream 402627 9563395 ~ 9570360 (-)
AMCG00000311 NA coding upstream 12670 10010136 ~ 10021096 (-)
AMCG00000303 NA coding upstream 28163 10025629 ~ 10028313 (-)
AMCG00000302 NA coding upstream 76347 10073813 ~ 10077565 (-)
AMCG00000298 eif2s1,eif2s1b coding upstream 85841 10083307 ~ 10090818 (-)
AMCG00000301 mpp5,LOC107657730,LOC107752770,LOC105026062,LOC107592802,LOC106611266 coding upstream 107035 10104501 ~ 10114810 (-)
G149438 NA non-coding downstream 51965 9919912 ~ 9921022 (-)
G149414 NA non-coding downstream 75237 9894546 ~ 9897750 (-)
G149391 NA non-coding downstream 225881 9744764 ~ 9747106 (-)
G149367 NA non-coding downstream 398856 9572134 ~ 9574131 (-)
G149346 NA non-coding downstream 428073 9544667 ~ 9544914 (-)
G149532 NA non-coding upstream 597260 10594726 ~ 10594935 (-)
G149539 NA non-coding upstream 715011 10712477 ~ 10712681 (-)
G149567 NA non-coding upstream 1135935 11133401 ~ 11134191 (-)
G149573 NA non-coding upstream 1178215 11175681 ~ 11176066 (-)
G149596 NA non-coding upstream 1340925 11338391 ~ 11368231 (-)
G149441 NA other downstream 37437 9930970 ~ 9935550 (-)
G149402 NA other downstream 140854 9831755 ~ 9832133 (-)
G149395 NA other downstream 206193 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 431728 9540611 ~ 9541259 (-)
G149321 NA other downstream 484378 9487879 ~ 9488609 (-)
AMCG00000300 NA other upstream 32261 10029727 ~ 10059000 (-)
AMCG00000334 NA other upstream 1789623 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 1843014 11840480 ~ 11847948 (-)
G149751 NA other upstream 2084077 12081543 ~ 12083214 (-)
G149847 NA other upstream 2525054 12522520 ~ 12542310 (-)

Expression


Co-expression Network