AMCG00000311


Basic Information

Item Value
gene id AMCG00000311
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10010136 ~ 10021096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000311
atgtcttcGGAAGAGTTTGAAAAGTTCCACGAAATATACAGCAGTCTTTACGAAGAACTCAAATTGATGCCGGATAGAGCGTTCAGATGTTACGGAGAGGAAAAGAAACGGCTTGTAAGAGACTTCGATGAGAAAGTAGGAGAGGCGGGTGAAATGCTCCAGGGAATGGAGAAAGAATTGGTCGGAGCACCTCCATCCTACCGGAACTCTATGTCTACTAAGATCCGCATTTATAAGAGGGACCTTGGGAAGCTACAGCGTGACATGAAGAGCACAGACCTGGGCACTGGGCCTGGATATCGAGGAGAGGGCAAATATGGGGTCTACACTGCAGAAAACGAGCAGAGTACACACTTGCAGTCTCAGAGAGCCCTGCTTCTCCAGGGAACAGAGTCTCTCAACCGGGCATCTCAGAGCATTGAGCGATCCCAACGGATAGCAGCTGAGACAGACCACATCGGTACAGACATCATTGAGGAGCTGGGAGAACAGAGGGAACAGCTGGACCGCACCAGAGACAGATTGGTCCACACTGGGGAGAATCTCAGTCGAAGTCGGAGGATTCTTCGCTCCATGTCCAGAAGATTGATGACCAACAAACTTTTGCTTTCAGTCATTATCATCATGGAGATCGCCATCCTGGGGGCAGTGGTTTACCTCAAGTTTTTCAGGAAtCCACAAATAACCATAAAGGAGCTTTGGAATGcgaagtaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K08493 VTI1; vesicle transport through interaction with t-SNAREs 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000311 True 714 mRNA 0.49 7 10010136 10021096

Neighbor

gene id symbol gene type direction distance location
AMCG00000310 rbm25,LOC103353665 coding downstream 12670 9972987 ~ 9997466 (-)
AMCG00000308 LOC101074829,LOC107664419 coding downstream 39554 9960894 ~ 9970582 (-)
AMCG00000312 plekhd1 coding downstream 55116 9942425 ~ 9955020 (-)
AMCG00000309 NA coding downstream 84832 9921319 ~ 9925304 (-)
AMCG00000284 ccdc177,LOC103144771,LOC106922444,LOC102219675,LOC102789726 coding downstream 244368 9763615 ~ 9765768 (-)
AMCG00000303 NA coding upstream 4533 10025629 ~ 10028313 (-)
AMCG00000302 NA coding upstream 52717 10073813 ~ 10077565 (-)
AMCG00000298 eif2s1,eif2s1b coding upstream 62211 10083307 ~ 10090818 (-)
AMCG00000301 mpp5,LOC107657730,LOC107752770,LOC105026062,LOC107592802,LOC106611266 coding upstream 83405 10104501 ~ 10114810 (-)
AMCG00000299 NA coding upstream 104166 10125262 ~ 10127956 (-)
G149438 NA non-coding downstream 89114 9919912 ~ 9921022 (-)
G149414 NA non-coding downstream 112386 9894546 ~ 9897750 (-)
G149391 NA non-coding downstream 263030 9744764 ~ 9747106 (-)
G149367 NA non-coding downstream 436005 9572134 ~ 9574131 (-)
G149346 NA non-coding downstream 465222 9544667 ~ 9544914 (-)
G149532 NA non-coding upstream 573630 10594726 ~ 10594935 (-)
G149539 NA non-coding upstream 691381 10712477 ~ 10712681 (-)
G149567 NA non-coding upstream 1112305 11133401 ~ 11134191 (-)
G149573 NA non-coding upstream 1154585 11175681 ~ 11176066 (-)
G149596 NA non-coding upstream 1317295 11338391 ~ 11368231 (-)
G149441 NA other downstream 74586 9930970 ~ 9935550 (-)
G149402 NA other downstream 178003 9831755 ~ 9832133 (-)
G149395 NA other downstream 243342 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 468877 9540611 ~ 9541259 (-)
G149321 NA other downstream 521527 9487879 ~ 9488609 (-)
AMCG00000300 NA other upstream 8631 10029727 ~ 10059000 (-)
AMCG00000334 NA other upstream 1765993 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 1819384 11840480 ~ 11847948 (-)
G149751 NA other upstream 2060447 12081543 ~ 12083214 (-)
G149847 NA other upstream 2501424 12522520 ~ 12542310 (-)

Expression


Co-expression Network