AMCG00000316 (LOC106571665)


Basic Information

Item Value
gene id AMCG00000316
gene name LOC106571665
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10780110 ~ 10783723 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000316
GAAGCCAATGACAAAGATGTGCAGGTGGTTGAGCTACCAATTGTAGACAGTTTGCACCCACGCCCACCCTATCTGCCACTGGCTATCCCAGAAGACCTTGCAGACAGGCTGGACCGTCTCCATGGCGACCCTTCCGTGTGGTGGGTCTCGCAGTTTGTCAAGTACCTCATCCGACCGCAGGCCTGGCTGGAGAAAGAAATTGATGAAGCCACAAGGAAACTAGGATTCAAGCATCCAATAATTGGTGTCCACGTACGGCGAACAGATAAAGTGGGCACAGAGGCGGCATTTCATCCTATTGAGGAGTACATGGTCCACGTGGAGGAACACTTTCAGAGACTGGCCCGCAATATGCATGTGGACAAAAAACGCGTCTACCTGGCGACAGATGACCCTTCCTTGCTGCAGGAAGCGAAAGCAAAGTACCAAGATTATGAGTTCATAAGTGACAACTCCATATCCTGGTCTGCGGGCCTGCATAATCGCTACACAGAAAATTCACTGCGAGGTGTCATACTGGACATCCACTTCCTCTCCCAGACTGATTTTCTGGTCTGTACCTTCTCATCACAGGTGTGTCGAGTGGCCTATGAGATCATGCAGACCCTCCATCCTGATGCCTCGTCGTATTTCCATTCATTGGATGACATCTACTACTTCGGAGGACAAAATGCTCACAATCAGATAGCCATATATCCGCATCACCCTCGGACTGGGGACGAGATCCCCTTAGAGCCGGGTGATGTCATAGGGGTGGCTGGCAACCACTGGGATGGTTACTCCAAAGGGATTAACAGGAAAATGGGCCGAACAGGCCTTTACCCGTCCTACaaagtgaaggaaaaaataGAGACAGTGAAGTACCCAACGTACCCTGAAGCAGACAAGCTAATGCATCAG

Function

NR:

description
PREDICTED: alpha-(1,6)-fucosyltransferase-like

GO:

id name namespace
GO:0036071 N-glycan fucosylation biological_process
GO:0033578 protein glycosylation in Golgi biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008424 glycoprotein 6-alpha-L-fucosyltransferase activity molecular_function

KEGG:

id description
K00717 FUT8; glycoprotein 6-alpha-L-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000316 True 900 mRNA 0.50 4 10780110 10783723

Neighbor

gene id symbol gene type direction distance location
AMCG00000295 LOC108443923,LOC108270253 coding downstream 486638 10278809 ~ 10293472 (-)
AMCG00000296 gphna,LOC107752769,LOC107657705 coding downstream 570882 10161709 ~ 10209228 (-)
AMCG00000299 NA coding downstream 652154 10125262 ~ 10127956 (-)
AMCG00000301 mpp5,LOC107657730,LOC107752770,LOC105026062,LOC107592802,LOC106611266 coding downstream 665300 10104501 ~ 10114810 (-)
AMCG00000298 eif2s1,eif2s1b coding downstream 689292 10083307 ~ 10090818 (-)
AMCG00000317 LOC107733188,LOC106611223,LOC106602554,LOC108433921,LOC108270174 coding upstream 31261 10814984 ~ 10826988 (-)
AMCG00000318 NA coding upstream 75032 10858755 ~ 10861525 (-)
AMCG00000319 NA coding upstream 423726 11207449 ~ 11210136 (-)
AMCG00000320 NA coding upstream 437197 11220920 ~ 11221514 (-)
AMCG00000349 NA coding upstream 527036 11310759 ~ 11473260 (-)
G149539 NA non-coding downstream 67429 10712477 ~ 10712681 (-)
G149532 NA non-coding downstream 185175 10594726 ~ 10594935 (-)
G149438 NA non-coding downstream 859088 9919912 ~ 9921022 (-)
G149414 NA non-coding downstream 882360 9894546 ~ 9897750 (-)
G149391 NA non-coding downstream 1033004 9744764 ~ 9747106 (-)
G149567 NA non-coding upstream 349678 11133401 ~ 11134191 (-)
G149573 NA non-coding upstream 391958 11175681 ~ 11176066 (-)
G149596 NA non-coding upstream 554668 11338391 ~ 11368231 (-)
G149603 NA non-coding upstream 653644 11437367 ~ 11437819 (-)
G149616 NA non-coding upstream 743147 11526870 ~ 11527092 (-)
AMCG00000300 NA other downstream 721110 10029727 ~ 10059000 (-)
G149441 NA other downstream 844560 9930970 ~ 9935550 (-)
G149402 NA other downstream 947977 9831755 ~ 9832133 (-)
G149395 NA other downstream 1013316 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 1238851 9540611 ~ 9541259 (-)
AMCG00000334 NA other upstream 1003366 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 1056757 11840480 ~ 11847948 (-)
G149751 NA other upstream 1297820 12081543 ~ 12083214 (-)
G149847 NA other upstream 1738797 12522520 ~ 12542310 (-)
G150138 NA other upstream 3040231 13823954 ~ 13826709 (-)

Expression


Co-expression Network