AMCG00000331 (tbp)


Basic Information

Item Value
gene id AMCG00000331
gene name tbp
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11726600 ~ 11730877 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000331
TCGCTTTGATCAACTGAGTGGGTTCAAATAAACATCGCCtagttttttaatcaataatttTATGTACAAAACATCCTTATGGATGGAGAATCTTCTCTGGAAAGTTATTTTGACCAGTCGATTGCCAATGACCCGCCCGAGTGCTCGTATCCCTCCATGATGGGCTTTGAGAGGGACCTGGGCCTGCAGGACACCTCCTTCCTGTCCTCCGTGGGAGATCAGGACAAGGATCTGTCAGAGGATTTAGACCTCAGTTTTCTCCCAGACGACCTCACTGCCCAGGATGAGCTGCCACAGAGAGGGGGTGCTGACGAGACCCAGGACAGTGGCATACACGACACAGGCATTGGAGAGCCCACTACTGTGGAGACTGGCAATGCCCCTCCAGGAGCCTCCCCTTTCTGTCCTCTTCCCATGACCCCCATGACTCCCATGACACCCATGACCCCAGTGTCTGAAAGTTCAGGAATCGTCCCTCAGCTACAAAATATTGTATCAACTGTGAATCTGGCCTGCAGCCTGGACCTGAAGTCCATAGCCTTACAGGCTCGCAATGCAGAGTACAACCCCAAGCGCTTTGCAGCTGTAATCATGAGGATCCGGGAGCCCAGGACCACCGCGCTGATCTTCAGCTCGGGGAAGATGGTGTGCACTGGGGCCAAGAGTGAGGAGCAGTCTCGACTGGCGGCCCGGAAATATGCCCGGGTGGTGCAGAAACTGGGCTTCCCTGCCAAGTTCCTGGACTTCAAGATTCAGAACATGGTGGGCAGCTGTGACGTCTGCTTCCCTATTCGTCTGGAGGGTCTGGTCCTCACGCACCAGCAGTTCAGCAGCTATGAGCCAGAGCTGTTTCCAGGGCTGATCTACCGCATGGTGAAGCCTCGCATTGTCCTGCTGATCTTTGTGTCGGGGAAAGTGGTGCTGACAGGAGCTAAAGAACGCTCGGAGATCTATGAAGCTTTTGAAAACATCTACCCCATTCTGAAGggatttaaaaagcaatgatACTGTTGTCACTGTCCACCTGGATACAGAAACTTGATGCACTTGATTCTTTATCTGCGatgttgtatgtatatgtatgtaatatgaattaaagaaaattataatggatatttgtgtaaaaaaaaaaaaaagatgctggcttgttttagtttttcaataaatgt

Function

symbol description
tbp Enables DNA binding activity. Involved in gastrulation and mRNA catabolic process. Acts upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in late onset Parkinson's disease; schizophrenia; spinocerebellar ataxia type 17; and type 1 diabetes mellitus. Orthologous to human TBP (TATA-box binding protein).

NR:

description
PREDICTED: TATA-box-binding protein

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0010508 positive regulation of autophagy biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000331 True 1169 mRNA 0.49 7 11726600 11730877

Neighbor

gene id symbol gene type direction distance location
AMCG00000330 atg14 coding downstream 411 11710674 ~ 11726189 (-)
AMCG00000321 LOC105356882 coding downstream 57280 11662857 ~ 11669320 (-)
AMCG00000322 NA coding downstream 89564 11636740 ~ 11637036 (-)
AMCG00000349 NA coding downstream 253340 11310759 ~ 11473260 (-)
AMCG00000320 NA coding downstream 505086 11220920 ~ 11221514 (-)
AMCG00000329 NA coding upstream 3950 11734827 ~ 11760237 (-)
AMCG00000328 NA coding upstream 42522 11773399 ~ 11781063 (-)
AMCG00000338 NA coding upstream 54200 11785077 ~ 11786189 (-)
AMCG00000337 NA coding upstream 84062 11814939 ~ 11829846 (-)
AMCG00000335 lrrc57,LOC106611250 coding upstream 102282 11833159 ~ 11835155 (-)
G149616 NA non-coding downstream 199508 11526870 ~ 11527092 (-)
G149603 NA non-coding downstream 288781 11437367 ~ 11437819 (-)
G149596 NA non-coding downstream 358369 11338391 ~ 11368231 (-)
G149573 NA non-coding downstream 550534 11175681 ~ 11176066 (-)
G149567 NA non-coding downstream 592409 11133401 ~ 11134191 (-)
G149665 NA non-coding upstream 50326 11781203 ~ 11782635 (-)
G149722 NA non-coding upstream 254970 11985847 ~ 11986112 (-)
G149723 NA non-coding upstream 255315 11986192 ~ 11986519 (-)
G149730 NA non-coding upstream 266961 11997838 ~ 11999294 (-)
G149754 NA non-coding upstream 356719 12087596 ~ 12087970 (-)
AMCG00000300 NA other downstream 1667600 10029727 ~ 10059000 (-)
G149441 NA other downstream 1791050 9930970 ~ 9935550 (-)
G149402 NA other downstream 1894467 9831755 ~ 9832133 (-)
G149395 NA other downstream 1959806 9756381 ~ 9766794 (-)
G149341 sos2 other downstream 2185341 9540611 ~ 9541259 (-)
AMCG00000334 NA other upstream 56212 11787089 ~ 11808825 (-)
AMCG00000336 NA other upstream 109603 11840480 ~ 11847948 (-)
G149751 NA other upstream 350666 12081543 ~ 12083214 (-)
G149847 NA other upstream 791643 12522520 ~ 12542310 (-)
G150138 NA other upstream 2093077 13823954 ~ 13826709 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006613 tbp coding NC_007124.7 CM002897.2 24381344 ~ 24396199 (-)