AMCG00000333 (si:dkey-13p1.4,LOC106610752,LOC108436737,LOC103041189,LOC107561535)


Basic Information

Item Value
gene id AMCG00000333
gene name si:dkey-13p1.4,LOC106610752,LOC108436737,LOC103041189,LOC107561535
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11854916 ~ 11863616 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000333
ATGTTTTCTCCCGAGGTGGAAACTGACACTGCTGCGGAAGACACGGCGCCGAGCAGCCCCAACGGAGGGGAGGAGACCCCCGCCAGCGCCGACGTCCTGGAGGAGCAGCGGCCGGTGAAGCAGTCTCTGAGCGCCTCTATGTGCCGTGAGTCACACTGGCGCTGCTTGCTGCTCTCCCTCCTAATGTACGGCTGCCTGGGAGCGGTGGCATGGTGCCAGCTGACGCAAGTGACCAAGCTGAAGTTTGACTCCACCTCTGCCACTTCCCTGACGGCCTCCATCTCTTCCCTGCGCAGGGCTGGGGACCGCGACATGATCTACCACGACAGCCCCTGTTCCGACGGCTATGTCTACATCCCACTGGCCTTCCTGTTCATGCTGTACACGGTGTACCTGGTGGAGTGTTGGCACTGCCGCGCCCGCAGCGAGCTCCAGTGCAAGGCGGATGTGGACAGCGTATATGAGAGGGTACTGCGCATGCGCCAGGCCCGCCCCTGTGTCTGGTGGAAGGCCATCAGTTACCACTTTGTCAGGAGGACACGCCAGGTCACCCGGTATCGCAATGGAGATGCCTACACCACCACACAGGTTTACCACGAGCGAGTCAACACACACGTGGCTGAAGGGGAGTTAGATTACAGCCGCTGTGGGGTGAAGGACGTGTCAAGGGACCTCAGAGGACTGGAGGGGCACCAAGCCACCAGGCTGAGATTCACTAAATGCTTCAGTTTTGCTGGTGCAGGGCCCGAGAATACTTATCTCAACCAGCGTGCCAGGTTCTTCTCTGAAATAGAAGGGCTGGATGACTACATGGAGGCCCGGGAAGGAATGCAACTGAAGAACGTGGATTTCAAAGAACACCTGATAGCATACGTGGACCCCGATCGACCTCCATGGTACGCCTCCCATGTTGCATTCTGGTTGGCCGCTTTGCTCATGCTGTCTTGGCCTCTTCGTGTGCTGATTGAGTACCGAACCGCTTATGTACACTACCACGTGGAGAAGCTCTTTGGCCTGGAGTACAACAACAGCGCCCCTTCTCCTGCAGGAGATGACATTCCCCTGCGGAGCGGTAGCTATGGTCTACCCAGagcagaaactgcagacagcaCCGAGCTGGAGTGGCACATACGATCCAATCGGCAGCTCATCCCCAGCTATTCTGAGGCCATGCTGATGGAACTGGGAGGTTCTGGTTCTGGATCTGGGGAAACTGTCTCTCCCACCTGCTTCCTGCGTGACAGTTACCCTGCCCGGAGTTACGGGGCTTTGGTCCAGGACTGTGAGCAATGCTGCCAGCTCCAGGATGGGCAGAGGCAAGCTGCCACAAGTTCCAGCTGCTCGTCCATATTCTCCCGGCATGCTTTCCACTCCCGGCTCTCTCTGGACACCTCCCGGTTCTCGTTATGCCGTATGTATGGGTCGAGGCGAACCATGGGGCTGTGGAGGAGCAGAAGCAGCACGCTGACTGAGCGCTGCTGCGTGGATGAGCAGTGCTGCCGTTCCTACTCCAGCCAGCTGGCACTCAACGAAAGCCCACCCACCTACCGCGATGCTAGGTTCTTCCCAGTCCTTATCATCCACCGGCCGGAGGGTTGTGGGGACACTGGGGAGGTGCGTCGGTACTACGTGCGTAGAGGATCTTGCTGCCTGGAGACTTCTCTCTGA

Function

symbol description
si:dkey-13p1.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: transmembrane protein 151B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000333 True 1668 mRNA 0.59 2 11854916 11863616

Neighbor

gene id symbol gene type direction distance location
AMCG00000335 lrrc57,LOC106611250 coding downstream 19761 11833159 ~ 11835155 (-)
AMCG00000337 NA coding downstream 25070 11814939 ~ 11829846 (-)
AMCG00000338 NA coding downstream 68727 11785077 ~ 11786189 (-)
AMCG00000328 NA coding downstream 73853 11773399 ~ 11781063 (-)
AMCG00000329 NA coding downstream 94679 11734827 ~ 11760237 (-)
AMCG00000354 NA coding upstream 138638 12002254 ~ 12004300 (-)
AMCG00000355 NA coding upstream 141490 12005106 ~ 12019181 (-)
AMCG00000356 NA coding upstream 160978 12024594 ~ 12025496 (-)
AMCG00000342 NA coding upstream 279907 12143523 ~ 12144650 (-)
AMCG00000341 NA coding upstream 295850 12159466 ~ 12161567 (-)
G149665 NA non-coding downstream 72281 11781203 ~ 11782635 (-)
G149616 NA non-coding downstream 327824 11526870 ~ 11527092 (-)
G149603 NA non-coding downstream 417097 11437367 ~ 11437819 (-)
G149596 NA non-coding downstream 486685 11338391 ~ 11368231 (-)
G149573 NA non-coding downstream 678850 11175681 ~ 11176066 (-)
G149722 NA non-coding upstream 122231 11985847 ~ 11986112 (-)
G149723 NA non-coding upstream 122576 11986192 ~ 11986519 (-)
G149730 NA non-coding upstream 134222 11997838 ~ 11999294 (-)
G149754 NA non-coding upstream 223980 12087596 ~ 12087970 (-)
G149755 NA non-coding upstream 226391 12090007 ~ 12090266 (-)
AMCG00000336 NA other downstream 6968 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 46091 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 1795916 10029727 ~ 10059000 (-)
G149441 NA other downstream 1919366 9930970 ~ 9935550 (-)
G149402 NA other downstream 2022783 9831755 ~ 9832133 (-)
G149751 NA other upstream 217927 12081543 ~ 12083214 (-)
G149847 NA other upstream 658904 12522520 ~ 12542310 (-)
G150138 NA other upstream 1960338 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 2139460 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 2382201 14245817 ~ 14261332 (-)

Expression


Co-expression Network