AMCG00000335 (lrrc57,LOC106611250)


Basic Information

Item Value
gene id AMCG00000335
gene name lrrc57,LOC106611250
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11833159 ~ 11835155 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000335
ATGGGGAACAGCGCCCTGAAGGCTCACCTTGAGACCTCCCAGAAGACGGGGGTGTTTCAGCTCACAGGCAAGGGCCTACCCGAGTTTCCGGAAGACCTCCAAAGCCTGTCTAGCAACCTACGGACAGTAGATCTCTCCAACAACAAGATCGAAGTCTTACCCCCCTTTATTGGGATCTTCCTCAGCCTCAAGAGCCTCACCCTCAACTGCAACAAACTCACATGTCTCCCAGAGGAGATTGGGAAACTGAAGAAGCTGGAGACCCTGCACCTCAACGGGAACCAGCTGCAGAGACTGCCGGCGTCTATGGGACAGCTGAAGGCACTACGCACCCTGGGCCTCTCTGGGAACCGCTTTCGAGAGTTCCCTGGCAATCTGGGCACCCTCCGCCACCTGGACCTGTTAGACTTGTCCAAGAATCACATCCAGGCTGTGCCAGAAGAGGTGGCCTCCCTACAGGTCATTGAGTTGAACCTCAATCAGAACCAGATCTCGGCGGTGTCCCCAGAAGTATCGAAGTGCCAGCGGCTGAAGGTGCTGCGGCTGGAGGAGAACTGCCTGGAGCTGTCCTCACTGCCGCCATCCATCCTGACCGAGTCCCAGGTGTCCCTTCTCGCTCTGGAAGGGAATCTCTTCGAGGTGAAGAAGATCTGGGATATGGAAGGATATGACAAGTACATGGAGCGCTTCACTGCGACCAAGAAGAAATTCGCCTGA

Function

symbol description
lrrc57 Orthologous to human LRRC57 (leucine rich repeat containing 57).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 57

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000335 True 717 mRNA 0.56 5 11833159 11835155

Neighbor

gene id symbol gene type direction distance location
AMCG00000337 NA coding downstream 3313 11814939 ~ 11829846 (-)
AMCG00000338 NA coding downstream 46970 11785077 ~ 11786189 (-)
AMCG00000328 NA coding downstream 52096 11773399 ~ 11781063 (-)
AMCG00000329 NA coding downstream 72922 11734827 ~ 11760237 (-)
AMCG00000331 tbp coding downstream 102282 11726600 ~ 11730877 (-)
AMCG00000333 si:dkey-13p1.4,LOC106610752,LOC108436737,LOC103041189,LOC107561535 coding upstream 19761 11854916 ~ 11863616 (-)
AMCG00000354 NA coding upstream 167099 12002254 ~ 12004300 (-)
AMCG00000355 NA coding upstream 169951 12005106 ~ 12019181 (-)
AMCG00000356 NA coding upstream 189439 12024594 ~ 12025496 (-)
AMCG00000342 NA coding upstream 308368 12143523 ~ 12144650 (-)
G149665 NA non-coding downstream 50524 11781203 ~ 11782635 (-)
G149616 NA non-coding downstream 306067 11526870 ~ 11527092 (-)
G149603 NA non-coding downstream 395340 11437367 ~ 11437819 (-)
G149596 NA non-coding downstream 464928 11338391 ~ 11368231 (-)
G149573 NA non-coding downstream 657093 11175681 ~ 11176066 (-)
G149722 NA non-coding upstream 150692 11985847 ~ 11986112 (-)
G149723 NA non-coding upstream 151037 11986192 ~ 11986519 (-)
G149730 NA non-coding upstream 162683 11997838 ~ 11999294 (-)
G149754 NA non-coding upstream 252441 12087596 ~ 12087970 (-)
G149755 NA non-coding upstream 254852 12090007 ~ 12090266 (-)
AMCG00000334 NA other downstream 24334 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 1774159 10029727 ~ 10059000 (-)
G149441 NA other downstream 1897609 9930970 ~ 9935550 (-)
G149402 NA other downstream 2001026 9831755 ~ 9832133 (-)
G149395 NA other downstream 2066365 9756381 ~ 9766794 (-)
AMCG00000336 NA other upstream 5325 11840480 ~ 11847948 (-)
G149751 NA other upstream 246388 12081543 ~ 12083214 (-)
G149847 NA other upstream 687365 12522520 ~ 12542310 (-)
G150138 NA other upstream 1988799 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 2167921 14003076 ~ 14028927 (-)

Expression


Co-expression Network