AMCG00000343


Basic Information

Item Value
gene id AMCG00000343
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12173635 ~ 12181462 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000343
ATGATTCTGCCTTCAAGCTACCCTGGCGAGATCCCTGAGGTGGCACTGTGCCCTCCAGAGACTCCGGAAAGGGAGCCACAGCTAACTCTTATCCAGACGGAAGGGGATCACCCCAGCAGCCCCGGGAAGGCTTCCCCTCCTGAGCTGTACCACCAGGTGTCTCAAGGCTGCTCCCATCAGTCACCGCTCCTCAAGAGATGCCGATACTGTGGGCATCGGCAGCCAGTCCCCAGCAGTCCCTGTCCTGAGCGCCACCCAGCCCAAGCCAGCCCCCGCCCAGACTGCTCCTCAGCCACTGTAAAGACCGCTCACAGTTGCAGCCCTTCCCATGTGCCCTCCTGTCGGGACACCGTGCACTGCCATTGGCTGCAGGGATCACATGACGCCGGGAACCACCAACCACTGCAACACCACGTCGTGACTGTCAGACATGAAAGGGACTACAGGATCCCCAAAAGTTACTCCCAGTTGATTGCGGACTGTCCAATGGCAGTGCTCGTCACCTGTGCAGTTGTCTTCCTGGGTTGTTCATTAGCTGGGATTTTGATTGGTCCCTTGCCAGACTTCTCCAACCCCCTCTCAGGGTTGGAGCCACGTGGGACAGATATTGGCAGGCGACTGTCAGCCTGGAAGATACTACAGGAGAACACAGGCCCGGAGAAAGCCATGTCTCTTTTCCCACAGAAACTCACCCAGCAGTCTCCTCCCAGGTACGGCGAGGAGGGTGCAGGTGGCCCTGGCAGGAGTAGTGATCAGCCCAGCCCGCGGCAGAGGAGGATGCTGAACTGGGATTTCGTCCAAGATACCTTCTTCTGTGACTCACCAGGAGAAAACTACGCACGACTGGTATTTCGCTCTGGAAACTCAGCCAGTCTGTGGAGTTTGCAGGCCATTCACTCCATGTGTGAGATGGAGCAAGCAAGGATTCGCTCTCATGCTCAATTCCAAGACCTGTGTAAACAACAAGGCAGGGGAGATGGGGTGGGGGAATCGGAACGACGGGAATGCTGCCCGAGCTGGTCCCTGGGCAACTACCTGGCCATGCTGAGCAACGCCACTTCCTGCCTCGGTCTGACTGAAGGTCAGGTGCTTGAAAGCCTGCATCTGCTCCGCCAGTGTGCCCCCTACTACCACGATGGAAGCCTGGCCCCAGCGTGTGCCGAGAAGGGGAAACTTGGCCGTTGTTCGTCCGTGCCACTCCAATGCAAACACTCCAGAGCCATTTATCAGATACTGCATTTCCTGGTAGATAAAGATTTCCTTGGACCTCAGACTATAGGGTATAAGGTCCCCTCACTCAAGTACAGTCTGCTGTTTCTACCCGTGAAGAAGGGTGATCCCATGATGAATATATACCTAGATAATCTAGAAGGCCGTGATTTGACAAATGGTATCACGACCATCACTGGCATGGACTTGGGCATCAAACAGAAACTTTTCCAATACTACCTGGCCCGGGACTCTGTATACCCTGTCCTAGCAGTAGTCACATTATTTCTCACTATGGCCTTCTATCTTCGCTCACTTTTCCTGTCAGCGATGTCTCTAGCAGCAGTCCTGGGCTCCTTAATGTCCTCCTATTTCTTTTACAAAGTAGCTTTCCGACTCACGTTTTTCCCTTTCCTCAATCTCACAGCAGTGATGATCCTCTTGGGCAGTTGTGCCAACCAGGCTTTTATATTCACTGACCTCTGGAGCCTCCAGTTGTCCCAGAAGCCCCCAGCATCACTGGAGAGAAGGGTGAACAGGGCACTTCAGGAAGTAGGATACCTAATATTGGTATCAGGCCTGACCTCAAGTGCTGCGTTTTTCTCAGGATACATGAGCAGCATCACAGCAGTACGATGCTTTGCAGTGTACCTGGGAACTGCCACCCTGATCAGCTCACTCTCCTCCCTTATATGGTTGCCCTGCTCCCTCATCTTACGCGAGCGCTACgctgtggctgctgctgctgcggctcCAGCTGGAAAAACGTGCTGTGCCCTAAGCCCAGGGGGATTCTGGGATACCAGCTCACGCAAGCGGTGTCTTTTCTCACTGGTACGGAAGTTAAGGGGGTTAAGGCGTGGACTGACCGAGACCTCTGATTTACTCTTCATAAAGATCCTGCCATGTGGAGTGGTCAAGTTCCGTTATATTTGGGTTTGCTGGTTTGCAGTGCTGGCAGCTGGAGGAACGTATATAACATGCATTGATCCTGGCATGAAACTCCCATCTTCAGAGAGTAAGGCGGCCCAGCTGTTTCGCTCCAGTCATCCCTTCGAACGATACGATGCAGAGTACCGCCACCAATTCATGTTTGAGCGTTTGAAGAGTGGGGAGGAGAAACCAATGACAATTATGTTGGTGTGGGGGGTGCTCCCAACAGACAATGGAGATCACTTGAATCCCAAAAGCAATGGTTCCTTAGTGATGGATCCAGAATTTAACATGAGCAGCCCAGAAGCTCAATCGTGGTTGAGAGAACTTTGCTTGAGAATCCAGAACCAGAGCTTTTATTCCCCCATAGCGACAGCCTCTGAGGAGGAGCAAGGAGACAGTGTGTGCTTTGTGGAGCAGCTCTTACGCTGGGTGTCTATCCGGCGGTGCTCTGAAAGTGAGGATGCTTACAGTCTTTGCTGCAATGACATTCCTTTTCCTTACCTTCCAGATGTTTTTGAACATTGTCTGGGAATGATGGTAGCCGAGAAACAAGCAGCAGGCTCTCTCTTTGAAACTGGAGGGCCACGGTTTGATCCAGAGGGCCGACCTACAGCTCTCATTTTTGAGTTCACGACCACCCACTTCTATAGTTATAACTACAGTCAAGCTTCCAATTTCTATCAGGAAATCGAGGAATGGTTTCTCAAAGAAATGTCTGGCGCGCCCCCAGGCCTGCGCAAAGGCTGGTTTGTGAGCCAGTTGGCACTCTACGACTTGCAGCAGTGTCTAAGCTCCGAGACACTAGTAGTGATAGGGTTTTCAGTGGCCCTTGTATTTGCCCTGCTTCTTCTAACAACCTGGAACATTCTCCTGAGCATTTACGCAGCTGCTGCAGTTGGGGGCAGTGTTTTTGTTACAGTCGGCTTTCTGGTCCTCCTAGAGTGGCAGTTGAGTGGGTTGGAGGCACTTTTTATCTCGGCGGCAGCAGGGCTTTCTGTAGACTTTGCAGCTAACTACTGCGTTTCCTACAGCCTCTCGCCACACTCTGACCGGCTTGGAAGAGTAGCGCACTCCCTGAAGAGAATGGGCTGTCCTGCAGCCATAGGGGCTGGGGTATATTTCTGTATAGGTGTCATCATGCTACCTGCCACTGCATTGTTATTTCGTAAGCTTGGCATCTTCCTGCTGCTGGTGAAGTGTGTGGCTTGTGGATTCGCAACTTTCTTCTTCCAGTCCCTCTGCTGCTTCTTCGGGCCACAGAAGAACTGCGGGCAGATCTCTTGGCCTTGCACAACTGCAGGGGAAAACAATAAGGAAAGTCAAGAGGCTGGAAACTTGCTCTCGCCCTGTTCCGCTGCTGGGCCAGGATCTTCCAATTCTGCTGCCAATGGGGCTTTTGGCTGTGGGGGAAGGTCCAGAGTCAGGAGGAGTTTTGGAAaaggaggggaaggaggaggTCACCTCTGTCCGAGCCAGCAACGCCAGAGGCAAAGACAAAGCGGTGGTGGTAGGGAGTCTGAACAGTATGAGTTGCAACCACTTGCCTGCCAACTGAGTGACAGCTTTGAAAACAGCACCTGTACCAGCAAGCTCTCCAACAGACCCTCGGTACTCTCGGAGGAGATACAATTCCGCAGCCTGAGCCCCCGGAGGGATTTGGAACGGATGGACACGGAGGACGACGATGAGGAATTAACCAGCAGGCACCTGAAAACCTGCGTCCCTCCCCCAGCACTGCAGACCTCATCCCCCTACAAGGAGAACACCCTACGTCCTGTTGTGGTCCCCCCCAGTGAAATAACCCAGGAGCGGCTCCTGTGCAGACGGTGCAGGGGCCAGACAGGAGGCATGAAGCACTGGAACGTctccctgtcctcctcctccagcatgGAAgacatcatcatcagcagccaACCTCCAGATGGAGACCACAGGAGGTCACTCTCCATGGAAGGGGCTAGCAGCAGTCCTTTTGAACGCCATCCCCACCGACGCCTCCTGTCGTCCCAGTCTCAGAGCTCTTTTGAGGGGCTGGAGGACTCTAATGAGACTTGCTTAAGTGAAGTTGAGCCCGGACCTGCCACCCCACAGCCCTCTGCAGAGGCTGAAGTGGAACCCCAACCGGGACACCTCAACGGCAAGAGGGACACATTGCGTCTCTCCCTGAAGGAGACTGTGTTTGAGACTGCCTCCCCAGGGTCTGGAAGGGGAAGGACAAGCCAGGGGGAGCTACCTGTGATCTTGCCCAACAGCAAACCAGACCTGCCCGATGTGTGGATCAAGAGGGAAGGACGGGCAGGAGATGCCAGCTGA

Function

GO:

id name namespace
GO:0035195 gene silencing by miRNA biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K24681 DISP2; protein dispatched 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000343 True 4458 mRNA 0.54 8 12173635 12181462

Neighbor

gene id symbol gene type direction distance location
AMCG00000341 NA coding downstream 12068 12159466 ~ 12161567 (-)
AMCG00000342 NA coding downstream 28985 12143523 ~ 12144650 (-)
AMCG00000356 NA coding downstream 148139 12024594 ~ 12025496 (-)
AMCG00000355 NA coding downstream 154454 12005106 ~ 12019181 (-)
AMCG00000354 NA coding downstream 169335 12002254 ~ 12004300 (-)
AMCG00000348 degs2,LOC107697737,LOC107733197 coding upstream 185003 12366465 ~ 12379163 (-)
AMCG00000360 slc25a29,LOC101165114 coding upstream 223142 12404604 ~ 12414806 (-)
AMCG00000361 wars,LOC107088075,LOC103399041 coding upstream 241541 12423003 ~ 12428292 (-)
AMCG00000362 NA coding upstream 279168 12460630 ~ 12471493 (-)
AMCG00000364 NA coding upstream 307721 12489183 ~ 12517199 (-)
G149763 NA non-coding downstream 15164 12157749 ~ 12158471 (-)
G149756 NA non-coding downstream 75144 12090647 ~ 12098491 (-)
G149755 NA non-coding downstream 83369 12090007 ~ 12090266 (-)
G149754 NA non-coding downstream 85665 12087596 ~ 12087970 (-)
G149730 NA non-coding downstream 174341 11997838 ~ 11999294 (-)
G149801 NA non-coding upstream 122538 12304000 ~ 12304343 (-)
G149802 NA non-coding upstream 163947 12345409 ~ 12345710 (-)
G149942 dync1h1,LOC107568493 non-coding upstream 636318 12817780 ~ 12825281 (-)
G149994 NA non-coding upstream 761124 12942586 ~ 12946121 (-)
G149995 NA non-coding upstream 765854 12947316 ~ 12949350 (-)
G149751 NA other downstream 90421 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 325687 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 364810 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 2114635 10029727 ~ 10059000 (-)
G149441 NA other downstream 2238085 9930970 ~ 9935550 (-)
G149847 NA other upstream 341058 12522520 ~ 12542310 (-)
G150138 NA other upstream 1642492 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 1821614 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 2064355 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 2388500 14569962 ~ 14572432 (-)

Expression


Co-expression Network